Results 171 to 180 of about 459,773 (306)

Automated chromatin profiling with spa-ChIP-seq uncovers the impacts of condition variations. [PDF]

Genome Res
Cao Y, Patel L, Alcoser L, Mendenhall E, Benner C, Heinz S, Goren A.   +6 more
europepmc   +1 more source

Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data. [PDF]

PeerJ, 2023
Ahmed M, Kim DR.
europepmc   +1 more source

SERRATE Regulates Floral Meristem Activity by Antagonizing SHOOT MERISTEMLESS and Repressing Cytokinin Signaling

Advanced Science, EarlyView.
Floral meristem (FM) activity is crucial for the initiation of floral organs. In this study, SE represses IPT7 expression and cytokinin signaling via both the miR171c‐5p–KNAT2 and miR164c–CUC1/2–KNAT2 regulatory modules, thereby repressing FM activity. In contrast, STM induces both KNAT2 and IPT7 expression.
Wen Yang, Yiting Wang, Yuxin You, Zhiyue Wu, Dongbao Li, Xin Wang, Yongsheng Chang, Hang Zhao, Tao Zhu, Dijun Chen, Wei Chen, Bo Sun   +11 more
wiley   +1 more source

Analysis of Putative CzcR Targets Under Zinc Sufficiency and Zinc Excess Conditions in <i>Pseudomonas aeruginosa</i> Using ChIP-Seq. [PDF]

Microorganisms
Mauffrey F, Ducret V, Milho CG, Perron K.   +3 more
europepmc   +1 more source

Motif elucidation in ChIP-seq datasets with a knockout control. [PDF]

Bioinform Adv, 2023
Denisko D, Viner C, Hoffman MM.
europepmc   +1 more source

Decoding Spatial Heterogeneity and Multi‐Omics Regulation with Hierarchical Graph Learning

Advanced Science, EarlyView.
ABSTRACT Recent advances in spatial multi‐omics technologies have enabled the simultaneous profiling of multiple molecular layers within the same tissue slice, providing unprecedented opportunities to investigate tissue spatial organization. However, most existing computational methods identify spatial domains in a purely data‐driven manner, rarely ...
Jiazhou Chen, Jiahui Xie, Yi Liao, Junyu Li, Longqi Liu, Xin Gao, Hongmin Cai   +6 more
wiley   +1 more source

CHIP-seq and transcriptomics reveal a new role of circadian-regulated StBBX24 protein in potato reproduction. [PDF]

BMC Plant Biol
Grądzka K, Biegańska M, Koczyk G, Młodzińska A, Pawłowicz I, Kiełbowicz-Matuk A.   +5 more
europepmc   +1 more source

G6PC Downregulation Promotes Renal Calcium Oxalate Stone Formation via Lactate‐Induced SNAIL1 K206 Lactylation and Epithelial‐Mesenchymal Transition

Advanced Science, EarlyView.
In renal calcium oxalate stone formation, G6PC downregulation leads to lactate accumulation. This lactate mediates CBP/p300‐dependent lactylation of SNAIL1 at K206, promoting its nuclear translocation. Nuclear SNAIL1 activates the TGF‐β/SMAD3 pathway, driving epithelial‐mesenchymal transition and fibrosis, which ultimately facilitates crystal ...
Kai Liu, Boming Zhang, Ruixin Fan, Chen Duan, Yangjun Zhang, Huahui Wu, Xiangyang Yao, Xiongmin Mao, Bo Li, Youmiao Zeng, Zhenzhen Xu, Yang Wang, Mengcheng Luo, Xinyu Xu, Ninghan Feng, Heng Li, Hua Xu   +16 more
wiley   +1 more source

Evaluating Reproducibility and Best Practices for Replicate Design in G-Quadruplex ChIP-Seq Studies. [PDF]

Int J Mol Sci
Xiao K, Zhang R, Tu J.
europepmc   +1 more source

ChIP-Seq Analysis of SlAREB1 Downstream Regulatory Network during Tomato Ripening. [PDF]

Foods, 2023
He Y, Wu Q, Cui C, Tian Q, Zhang D, Zhang Y.   +5 more
europepmc   +1 more source