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Analysis and comparison of chloroplast genome codon usage patterns in five accessions of Toxicodendron vernicifluum. [PDF]
BMC GenomicsZhu Y +6 more
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Codon usage bias and selective constraints in Gentianales mitogenomes. [PDF]
BMC GenomicsAmenu SG +5 more
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Dissecting the evolutionary forces shaping codon usage bias in SFTSV from eastern China: Insights from a previously underrepresented region. [PDF]
VirulenceWang Y, Wang Z, Kou Z, Pang B, Wen H.
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Annual Review of Genetics, 2008
In a wide variety of organisms, synonymous codons are used with different frequencies, a phenomenon known as codon bias. Population genetic studies have shown that synonymous sites are under weak selection and that codon bias is maintained by a balance between selection, mutation, and genetic drift.
Ruth, Hershberg, Dmitri A, Petrov
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In a wide variety of organisms, synonymous codons are used with different frequencies, a phenomenon known as codon bias. Population genetic studies have shown that synonymous sites are under weak selection and that codon bias is maintained by a balance between selection, mutation, and genetic drift.
Ruth, Hershberg, Dmitri A, Petrov
openaire +4 more sources
Codon Usage Bias: An Endless Tale
Journal of Molecular Evolution, 2021Since the genetic code is degenerate, several codons are translated to the same amino acid. Although these triplets were historically considered to be "synonymous" and therefore expected to be used at rather equal frequencies in all genomes, we now know that this is not the case. Indeed, since several coding sequences were obtained in the late '70s and
Andrés Iriarte +2 more
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Codon bias from minimization of codon–anticodon interaction
Biosystems, 2016Inequalities between codon usage probabilities for quartets of codons are derived using a minimum principle for codon-anticodon interaction and a probability sum rule in the framework of the Crystal Basis Model of the genetic code. Performing this study separately for the Early and for the Eukaryotic Genetic Code, we observe a consistency in the ...
Sciarrino, Antonino, Sorba, Paul
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Codon usage bias of Catharanthus roseus
China Journal of Chinese Materia Medica, 2016This study aimed to provide guidance for the heterogenous gene expression, gene prediction and species evolution by analyzing codon usage bias of Catharanthus roseus.The codon composition and usage bias of 30 437 high-confidence coding sequences from C.roseus were analyzed and the proportion of rare codons of Escherichia coli and Saccharomyces ...
Ying, Li +4 more
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