Results 1 to 10 of about 18,552 (255)

A study on the codon usage bias of arenavirus common genes [PDF]

Frontiers in Microbiology
IntroductionThe Arenaviridae family consists of the genera Mammarenavirus, Reptarenavirus, Hartmanivirus, Antennavirus and Innmovirus. The codon usage bias between the different genera has not yet been studied comparatively.MethodsWe retrieved the ...
Pablo Daniel Thomas, María Florencia Ferrer, Mauricio J. Lozano, Ricardo Martín Gómez   +3 more
doaj   +4 more sources

Codon Usage Bias in Phytoplankton [PDF]

Journal of Marine Science and Engineering, 2022
Non-random usage of synonymous codons, known as “codon bias”, has been described in many organisms, from bacteria to Drosophila, but little is known about it in phytoplankton.
Marc Krasovec, Dmitry A. Filatov
doaj   +4 more sources

Dissecting the evolutionary forces shaping codon usage bias in SFTSV from eastern China: Insights from a previously underrepresented region [PDF]

Virulence
Severe fever with thrombocytopenia syndrome (SFTS), caused by Dabie bandavirus (SFTS virus, SFTSV), poses a growing public health concern in East Asia.
Yao Wang, Zequn Wang, Zengqiang Kou, Bo Pang, Hongling Wen   +4 more
doaj   +2 more sources

Comparative analysis of codon usage patterns of FUT2 from different species

Kuwait Journal of Science, 2022
Enterotoxigenic E. coli is an important zoonotic pathogen causing diarrhea in human and newborn animals. α - (1,2) fucosyltransferase 2 (FUT2) is closely associated with the formation of pathogenic receptors of Enterotoxigenic E. coli.
Chao Xu, Wenbin Bao, Shenglong Wu, Zhengchang Wu   +3 more
doaj   +1 more source

Analysis of codon usage pattern in Lonicera × heckrottii ‘Gold Flame’ based on chloroplast genome

Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 2022
Codon usage bias (CUB) was a unique feature of the genome, and revealing chloroplast genome codon usage bias can provide useful information for the evolution of plant species.
Jiaqiang ZHANG, Huichun LIU, Wenting XU, Kaiyuan ZHU   +3 more
doaj   +1 more source

Causes and implications of codon usage bias in RNA viruses. [PDF]

PLoS ONE, 2013
Choice of synonymous codons depends on nucleotide/dinucleotide composition of the genome (termed mutational pressure) and relative abundance of tRNAs in a cell (translational pressure).
Ilya S Belalov, Alexander N Lukashev
doaj   +1 more source

Codon Usage of Hepatitis E Viruses: A Comprehensive Analysis

Frontiers in Microbiology, 2022
Hepatitis E virus (HEV) is an emerging zoonotic pathogen with multiple species and genotypes, which may be classified into human, animal, and zoonotic HEV. Codon usage bias of HEV remained unclear.
Bingzhe Li, Han Wu, Ziping Miao, Linjie Hu, Lu Zhou, Yihan Lu   +5 more
doaj   +1 more source

Distinct responses to rare codons in select Drosophila tissues

eLife, 2022
Codon usage bias has long been appreciated to influence protein production. Yet, relatively few studies have analyzed the impacts of codon usage on tissue-specific mRNA and protein expression.
Scott R Allen, Rebeccah K Stewart, Michael Rogers, Ivan Jimenez Ruiz, Erez Cohen, Alain Laederach, Christopher M Counter, Jessica K Sawyer, Donald T Fox   +8 more
doaj   +1 more source

Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes. [PDF]

PLoS ONE, 2012
Codon bias is a phenomenon of non-uniform usage of codons whereas codon context generally refers to sequential pair of codons in a gene. Although genome sequencing of multiple species of dipteran and hymenopteran insects have been completed only a few of
Susanta K Behura, David W Severson
doaj   +1 more source

Strategies and Patterns of Codon Bias in Molluscum Contagiosum Virus

Pathogens, 2021
Trends associated with codon usage in molluscum contagiosum virus (MCV) and factors governing the evolution of codon usage have not been investigated so far.
Rahul Raveendran Nair, Manikandan Mohan, Gudepalya R. Rudramurthy, Reethu Vivekanandam, Panayampalli S. Satheshkumar   +4 more
doaj   +1 more source