Results 11 to 20 of about 36,414 (291)
Causes and implications of codon usage bias in RNA viruses. [PDF]
PLoS ONE, 2013 Choice of synonymous codons depends on nucleotide/dinucleotide composition of the genome (termed mutational pressure) and relative abundance of tRNAs in a cell (translational pressure).
Ilya S Belalov, Alexander N Lukashev
doaj +4 more sources
Molecular Biology Reports, 2021 Codon usage bias is the preferential or non-random use of synonymous codons, a ubiquitous phenomenon observed in bacteria, plants and animals. Different species have consistent and characteristic codon biases. Codon bias varies not only with species, family or group within kingdom, but also between the genes within an organism.
Sujatha Thankeswaran Parvathy +2 more
openaire +2 more sources
Codon usage bias in radioresistant bacteria [PDF]
Gene, 2020 Abstract The relationship between patterns of codon usage bias (CUB), the preferential usage of synonimous nucleotide triplets encoding the same amino acid, and radioresistance was investigated int he genomes of 16 taxonomically distinct radioresistant prokaryotic organisms and in a control set of 11 non-radioresistant bacteria.
Dilucca M. +3 more
openaire +4 more sources
The Codon Statistics Database: A Database of Codon Usage Bias
Molecular Biology and Evolution, 2022 Abstract We present the Codon Statistics Database, an online database that contains codon usage statistics for all the species with reference or representative genomes in RefSeq (over 15,000). The user can search for any species and access two sets of tables.
Krishnamurthy Subramanian +3 more
openaire +2 more sources
Evolution of Codon Usage Bias in Diatoms [PDF]
Genes, 2019 Codon usage bias (CUB)—preferential use of one of the synonymous codons, has been described in a wide range of organisms from bacteria to mammals, but it has not yet been studied in marine phytoplankton. CUB is thought to be caused by weak selection for translational accuracy and efficiency.
Krasovec, Marc, Filatov, Dmitry
openaire +4 more sources
Codon Bias Patterns of $E.coli$'s Interacting Proteins [PDF]
, 2015 Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differently across the variety of living organisms. The biological meaning of this phenomenon, known as codon usage bias, is still controversial.
Cimini, Giulio +4 more
core +8 more sources
Codon usage and codon context bias in Xanthophyllomyces dendrorhous [PDF]
BMC Genomics, 2015 Synonymous codons are used differentially in organisms from the three domains of life, a phenomenon referred to as codon usage bias. In addition, codon pair bias, particularly in the 3' codon context, has also been described in several organisms and is associated with the accuracy and rate of translation. An improved understanding of both types of bias
Baeza Cancino, Marcelo +4 more
openaire +5 more sources
Codon Usage of Hepatitis E Viruses: A Comprehensive Analysis
Frontiers in Microbiology, 2022 Hepatitis E virus (HEV) is an emerging zoonotic pathogen with multiple species and genotypes, which may be classified into human, animal, and zoonotic HEV. Codon usage bias of HEV remained unclear.
Bingzhe Li +5 more
doaj +1 more source
Distinct responses to rare codons in select Drosophila tissues
eLife, 2022 Codon usage bias has long been appreciated to influence protein production. Yet, relatively few studies have analyzed the impacts of codon usage on tissue-specific mRNA and protein expression.
Scott R Allen +8 more
doaj +1 more source
Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes. [PDF]
PLoS ONE, 2012 Codon bias is a phenomenon of non-uniform usage of codons whereas codon context generally refers to sequential pair of codons in a gene. Although genome sequencing of multiple species of dipteran and hymenopteran insects have been completed only a few of
Susanta K Behura, David W Severson
doaj +1 more source