Results 151 to 160 of about 36,066 (191)

<i>Arabidopsis thaliana</i> genes with codon usage bias similar to that of <i>B. amyloliquefaciens</i> are involved in the regulation of <i>A. thaliana</i> adaptation to high calcium stress by <i>B. amyloliquefaciens</i>. [PDF]

Front Plant Sci
Li F, Zhang Q, Lu Y, Chen X, Liu X, Qiu X, Gu Y, Wang P, Liu J.   +8 more
europepmc   +1 more source

Comparative analysis of codon usage bias in chloroplast genomes of ten medicinal species of Rutaceae. [PDF]

BMC Plant Biol
Shen L, Chen S, Liang M, Qu S, Feng S, Wang D, Wang G.   +6 more
europepmc   +1 more source

Genetic analysis of tomato brown rugose fruit virus reveals evolutionary adaptation and codon usage bias patterns. [PDF]

Sci Rep
Ghorbani A.
europepmc   +1 more source

Codon usage bias in yeasts and its correlation with gene expression, growth temperature, and protein structure. [PDF]

Front Microbiol
Baeza M, Sepulveda D, Cifuentes V, Alcaíno J.   +3 more
europepmc   +1 more source

Comparative genomics of thermosynechococcaceae and thermostichaceae: insights into codon usage bias. [PDF]

Acta Biochim Pol
Mou QH, Hu Z, Zhang J, Daroch M, Tang J.
europepmc   +1 more source

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Codon Usage Bias: An Endless Tale

Journal of Molecular Evolution, 2021
Since the genetic code is degenerate, several codons are translated to the same amino acid. Although these triplets were historically considered to be "synonymous" and therefore expected to be used at rather equal frequencies in all genomes, we now know that this is not the case. Indeed, since several coding sequences were obtained in the late '70s and
Andrés Iriarte, Guillermo Lamolle, Héctor Musto   +2 more
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Codon usage bias of Catharanthus roseus

China Journal of Chinese Materia Medica, 2016
This study aimed to provide guidance for the heterogenous gene expression, gene prediction and species evolution by analyzing codon usage bias of Catharanthus roseus.The codon composition and usage bias of 30 437 high-confidence coding sequences from C.roseus were analyzed and the proportion of rare codons of Escherichia coli and Saccharomyces ...
Ying, Li, Xue-Jun, Kuang, Xiao-Xuan, Zhu, Ying-Jie, Zhu, Chao, Sun   +4 more
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Estimate Codon Usage Bias Using Codon Usage Analyzer (CUA)

2017
One amino acid is added to a growing peptide by a ribosome through reading triple nucleotides, i.e., a codon, each time. Twenty species of amino acids are often coded by 61 codons, so one amino acid can be coded by more than one codon and the codons coding the same amino acid are called synonymous. Intriguingly, synonymous codons' usage is often uneven:
Zhenguo, Zhang, Gaurav, Sablok
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Codon usage bias in herpesvirus

Archives of Virology, 2010
In this study, I present a comprehensive analysis of codon usage bias in 43 herpesviruses for which the whole genome has been sequenced. The values of the effective number of codons revealed that the majority of the herpesviruses did not have high codon bias, with the exceptions of only simplexviruses and some varicelloviruses.
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Codon Usage in Trypanosomatids: The Bias of Expression

Trends in Parasitology, 2018
Translation and RNA decay, two processes in which all mRNAs are engaged, are intimately related processes. Two new studies demonstrate that, in trypanosomatids, codon usage largely shapes mRNA abundance in a translation-dependent manner. The findings indicate that mRNA decay control by codon choice is an ancient and conserved mechanism.
Esteban D, Erben, Christine, Clayton
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