Analysis of synonymous codon usage in Hepatitis A virus
Virology Journal, 2011 Background Hepatitis A virus is the causative agent of type A viral hepatitis, which causes occasional acute hepatitis. Nevertheless, little information about synonymous codon usage pattern of HAV genome in the process of its evolution is available.
Ma Lina +8 more
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Synonymous codon usage in TTSuV2: analysis and comparison with TTSuV1. [PDF]
PLoS ONE, 2013 Two species of the DNA virus Torque teno sus virus (TTSuV), TTSuV1 and TTSuV2, have become widely distributed in pig-farming countries in recent years.
Zhicheng Zhang, Wei Dai, Dingzhen Dai
doaj +1 more source
Analysis of codon usage bias of classical swine fever virus [PDF]
Veterinary World, 2021 Background and Aim: Classical swine fever (CSF), caused by CSF virus (CSFV), is a highly contagious disease in pigs causing 100% mortality in susceptible adult pigs and piglets. High mortality rate in pigs causes huge economic loss to pig farmers.
Sharanagouda S. Patil +3 more
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Rapid divergence of codon usage patterns within the rice genome [PDF]
, 2007 Background Synonymous codon usage varies widely between genomes, and also between genes within genomes. Although there is now a large body of data on variations in codon usage, it is still not clear if the observed patterns reflect the effects of ...
Huai-Chun Wang, Donal A Hickey
core +2 more sources
Compare the differences of synonymous codon usage between the two species within cardiovirus [PDF]
, 2011 Background Cardioviruses are positive-strand RNA viruses in the Picornaviridae family that can cause enteric infection in rodents and also been detected at lower frequencies in other mammals such as pigs and human beings.
Wen-qian Liu +7 more
core +2 more sources
Genetic Evolution and Molecular Selection of the HE Gene of Influenza C Virus [PDF]
, 2019 Influenza C virus (ICV) was first identified in humans and swine, but recently also in cattle, indicating a wider host range and potential threat to both the livestock industry and public health than was originally anticipated.
He, Wanting +10 more
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Clustering of classical swine fever virus isolates by codon pair bias
BMC Research Notes, 2011 Background The genetic code consists of non-random usage of synonymous codons for the same amino acids, termed codon bias or codon usage. Codon juxtaposition is also non-random, referred to as codon context bias or codon pair bias.
Leifer Immanuel +4 more
doaj +1 more source
Codon-based indices for modeling gene expression and transcript evolution
Computational and Structural Biotechnology Journal, 2021 Codon usage bias (CUB) refers to the phenomena that synonymous codons are used in different frequencies in most genes and organisms. The general assumption is that codon biases reflect a balance between mutational biases and natural selection.
Shir Bahiri-Elitzur, Tamir Tuller
doaj +1 more source
Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes
Frontiers in Microbiology, 2023 IntroductionCodon usage bias is a prevalent phenomenon observed across various species and genes. However, the specific attributes of codon usage in the mitochondrial genome of Ganoderma species remain unknown.MethodsIn this study, we investigated the ...
Peng Wu +8 more
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The Global Engineer : Incorporating global skills within UK higher education of engineers [PDF]
, 2008 Background. The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the family Filoviridae, and is responsible for several outbreaks of highly fatal hemorrhagic fever.
Butt, Azeem M +4 more
core +1 more source