8-Bit Adder and Subtractor with Domain Label Based on DNA Strand Displacement [PDF]
Molecules, 2018 DNA strand displacement, which plays a fundamental role in DNA computing, has been widely applied to many biological computing problems, including biological logic circuits.
Weixuan Han, Changjun Zhou
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Mechanism of strand displacement synthesis by DNA replicative polymerases [PDF]
Nucleic Acids Research, 2016 Replicative holoenzymes exhibit rapid and processive primer extension DNA synthesis, but inefficient strand displacement DNA synthesis. We investigated the bacteriophage T4 and T7 holoenzymes primer extension activity and strand displacement activity on ...
Allemand, Jean-François +6 more
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A CRISPR–Cas9-triggered strand displacement amplification method for ultrasensitive DNA detection [PDF]
Nature Communications, 2018 Isothermal DNA amplification techniques are useful for diagnostic applications in place of traditional PCR. Here the authors describe CRISDA, which combines CRISPR–Cas9 with strand displacement amplification and exhibits attomolar sensitivity and single ...
Wenhua Zhou +5 more
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Timed Pulses in DNA Strand Displacement Reactions. [PDF]
J Am Chem Soc, 2023 Inspired by naturally occurring regulatory mechanisms that allow complex temporal pulse features with programmable delays, we demonstrate here a strategy to achieve temporally programmed pulse output signals in DNA-based strand displacement reactions (SDRs).
Bucci J +4 more
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Kinetics of Toehold-Mediated DNA Strand Displacement Depend on FeII4L4 Tetrahedron Concentration. [PDF]
Nano Lett, 2021 Zhu J +4 more
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Design of DNA Strand Displacement Reactions [PDF]
Current Opinion in BiotechnologyDNA strand displacement (SD) reactions are central to the operation of many synthetic nucleic acid systems, including molecular circuits, sensors, and machines. Over the years, a broad set of design frameworks has emerged to accommodate various functional goals, initial configurations, and environmental conditions. Nevertheless, key challenges persist,
Križan Jurinović +3 more
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On Degradation-Induced Leak in Heterochiral DNA Strand Displacement Cascades. [PDF]
ACS Synth BiolMallette TL, Mishra A, Lakin MR.
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Anomeric DNA Strand Displacement with α-D Oligonucleotides as Invaders and Ethidium Bromide as Fluorescence Sensor for Duplexes with α/β-, β/β- and α/α-D Configuration. [PDF]
Chemistry, 2022 Zhang A, Kondhare D, Leonard P, Seela F.
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On the Biophysics and Kinetics of Toehold-Mediated DNA Strand Displacement [PDF]
Nucleic Acids Research, 2013 Dynamic DNA nanotechnology often uses toehold-mediated strand displacement for controlling reaction kinetics. Although the dependence of strand displacement kinetics on toehold length has been experimentally characterized and phenomenologically modeled ...
Yurke, Bernard
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Modular DNA strand-displacement controllers for directing material expansion [PDF]
Nature Communications, 2018 Materials which change shape in response to a trigger are of interest for soft robotics and targeted therapeutic delivery. Here, the authors report on the development of DNA-crosslinked hydrogels which can expand upon the detection of different ...
Joshua Fern, Rebecca Schulman
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