Results 51 to 60 of about 149,433 (366)

The biology and potential for genetic research of transposable elements in filamentous fungi

Genetics and Molecular Biology, 2005
Recently many transposable elements have been identified and characterized in filamentous fungi, especially in species of agricultural, biotechnological and medical interest.
Léia Cecilia de Lima Fávaro, Welington Luiz de Araújo, João Lúcio de Azevedo, Luzia Doretto Paccola-Meirelles   +3 more
doaj   +1 more source

The evolution of tyrosine-recombinase elements in Nematoda. [PDF]

PLoS ONE, 2014
Transposable elements can be categorised into DNA and RNA elements based on their mechanism of transposition. Tyrosine recombinase elements (YREs) are relatively rare and poorly understood, despite sharing characteristics with both DNA and RNA elements ...
Amir Szitenberg, Georgios Koutsovoulos, Mark L Blaxter, David H Lunt   +3 more
doaj   +1 more source

Perspective for Studying the Relationship of miRNAs with Transposable Elements

Current Issues in Molecular Biology, 2023
Transposable elements are important sources of miRNA, long non-coding RNAs genes, and their targets in the composition of protein-coding genes in plants and animals.
Rustam Nailevich Mustafin, Elza Khusnutdinova   +1 more
doaj   +1 more source

The effects of recombination rate on the distribution and abundance of transposable elements [PDF]

, 2008
Transposable elements (TEs) often accumulate in regions of the genome with suppressed recombination. But it is unclear whether this pattern reflects a reduction in the efficacy of selection against deleterious insertions or a relaxation of ectopic ...
Charlesworth, Brian, Dolgin, Elie S.
core   +2 more sources

Nucleotide sequence of the transposable DNA-element IS2

Nucleic Acids Research, 1979
The complete sequence of the transposable DNA element IS2 in gal OP-308:: IS2 (I) has been determined. This element is 1.327 bp long. The integrated element is flanked by a five base pair long sequence duplication. The termini of IS2 are not perfect inverted repeats, but a close approximation.
H. Sommer, Debabrota Ghosal, Heinz Saedler   +2 more
openaire   +4 more sources

EpiTEome: Simultaneous detection of transposable element insertion sites and their DNA methylation levels

Genome Biology, 2017
The genome-wide investigation of DNA methylation levels has been limited to reference transposable element positions. The methylation analysis of non-reference and mobile transposable elements has only recently been performed, but required both genome ...
Josquin Daron, R. Keith Slotkin
doaj   +1 more source

Enhancer activation from transposable elements in extrachromosomal DNA

AbstractExtrachromosomal DNA (ecDNA) is a hallmark of aggressive cancer, contributing to both oncogene amplification and tumor heterogeneity. Here, we used Hi-C, super-resolution imaging, and long-read sequencing to explore the nuclear architecture ofMYC-amplified ecDNA in colorectal cancer cells.
Katerina Kraft, Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong, King L. Hung, Britney Jiayu He, Rui Li, Seung K Park, Natasha E. Weiser, Jens Luebeck, Vineet Bafna, Jef D. Boeke, Paul S. Mischel, Alistair N. Boettiger, Howard Y. Chang   +16 more
openalex   +3 more sources

Transposable elements as new players in neurodegenerative diseases

FEBS Letters, 2021
Neurodegenerative diseases (NDs), including the most prevalent Alzheimer’s disease and Parkinson disease, share common pathological features. Despite decades of gene‐centric approaches, the molecular mechanisms underlying these diseases remain widely ...
Camille Ravel-Godreuil, Rania Znaidi, Tom Bonnifet, R. Joshi, J. Fuchs   +4 more
semanticscholar   +1 more source

The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation [PDF]

, 2008
We isolated and characterized a Brassica C genome-specific CACTA element, which was designated Bot1 (Brassica oleracea transposon 1). After analysing phylogenetic relationships, copy numbers and sequence similarity of Bot1 and Bot1 analogues in B ...
AGI, Arabidopsis Genome Initiative, Alix, Alix, Alix, Bandelt, Bateman, Bennetzen, Brunner, Casacuberta, Cui, Darling, DeMarco, Deragon, Edgar, Eichler, Fedoroff, Feschotte, Gaeta, Gish, Grandbastien, Hawkins, He, Heslop-Harrison, IHGSC, Inaba, Inagaki, Itoh, Jacobs, Jiang, Johnston, Kapitonov, Kapitonov, Kawasaki, Kazazian, Kubis, Kubis, Kuhn, Kurtz, Le, Leflon, Lenoir, Lysak, Maddison, Meyers, Miura, Morgante, Morgante, Nacken, Nicolas, Ozeki, O’Neill, Pereira, Peterson, Posada, Rocarro, Rodríguez, Schwarzacher, Shiba, Snowden, Snowdon, Sonnhammer, Strachan, Suzuki, Swofford, Talbert, Town, Turcotte, U, Vicient, Walbot, Wang, Wendel, Wicker, Wicker, Yang, Yang, Yu, Zabala, Zabala, Zhang, Zhang   +80 more
core   +1 more source

Integrating transposable elements in the 3D genome [PDF]

, 2019
Chromosome organisation is increasingly recognised as an essential component of genome regulation, cell fate and cell health. Within the realm of transposable elements (TEs) however, the spatial information of how genomes are folded is still only rarely ...
A Bousios, A Bridier-Nahmias, A Buckle, A Ciuffi, A Cournac, A Le Rouzic, AE Hafner, AL Sanborn, AN Boettiger, AP Wolffe, ARW Schroder, B Bonev, B Charlesworth, B Marini, C Vara, C Xue, CA Brackley, CA Brackley, CA Brackley, CA Brackley, CM Caragine, CP Brangwynne, CP Brangwynne, D Jost, D Michieletto, D Michieletto, D Michieletto, D Michieletto, D Pruss, D Pruss, D Schmidt, DG Schatz, DH Sanchez, DJ Winter, E Lieberman-Aiden, E Orlandini, E Serrao, EB Chuong, EP Nora, F Benedetti, F Erdel, G Fudenberg, G Kunarso, GP Wang, H Zayed, HE Lee, Horng D. Ou, I Solovei, IM Flyamer, J Dekker, J Kind, J Nuebler, J Wang, JH Sun, JM Santos-Pereira, Jonathan D Halverson, JR Dixon, JS Lucas, K Roessler, KD Taganov, KG Alavattam, KL Chan, L Hilbert, L Lu, LA Mirny, Lindsay M. Payer, M Benleulmi, M Chiang, M Ciubotaru, M Di Pierro, M Eltsov, M Kvaratskhelia, M Naughtin, M Pasi, MN Choudhary, N Gilbert, N Khanna, P Dong, PJ Flory, PM Pryciak, PS Schnable, R Collepardo-Guevara, R Craigie, R Raviram, R Schrijvers, R Stadhouders, R Stadhouders, R-s Nozawa, S Bianco, S Cheung, S Grob, S Zhou, SSP Rao, SSP Rao, T Cremer, T Nagano, T Sultana, T Wicker, TH Eickbush, V Aidinis, W-K Cho, X Gao, Y Shin, Y Zhang, YAG Fosado, Özgen Deniz   +105 more
core   +4 more sources