Results 31 to 40 of about 55,446 (204)

Multifactorial methods integrating haplotype and epistasis effects for genomic estimation and prediction of quantitative traits

open access: yesFrontiers in Genetics, 2022
The rapid growth in genomic selection data provides unprecedented opportunities to discover and utilize complex genetic effects for improving phenotypes, but the methodology is lacking. Epistasis effects are interaction effects, and haplotype effects may
Yang Da   +2 more
doaj   +1 more source

Recombining your way out of trouble: the genetic architecture of hybrid fitness under environmental stress [PDF]

open access: yes, 2020
Hybridization between species is a fundamental evolutionary force that can both promote and delay adaptation. There is a deficit in our understanding of the genetic basis of hybrid fitness, especially in non-domesticated organisms.
Bendixsen, D.   +5 more
core   +1 more source

Epistasis shapes the fitness landscape of an allosteric specificity switch

open access: yesNature Communications, 2021
Epistasis plays an important role in the evolution of novel protein functions because it determines the mutational path a protein takes. Here, the authors combine functional, structural and biophysical analyses to characterize epistasis in a ...
Kyle K. Nishikawa   +4 more
doaj   +1 more source

Hidden epistastic interactions can favour the evolution of sex and recombination. [PDF]

open access: yesPLoS ONE, 2012
Deleterious mutations can have a strong influence on the outcome of evolution. The nature of this influence depends on how mutations combine together to affect fitness.
Joel R Peck, David Waxman, John J Welch
doaj   +1 more source

Whole genome sequencing reveals epistasis effects within RET for Hirschsprung disease

open access: yesScientific Reports, 2022
Common variants in RET and NRG1 have been associated with Hirschsprung disease (HSCR), a congenital disorder characterised by incomplete innervation of distal gut, in East Asian (EA) populations.
Yanbing Wang   +9 more
doaj   +1 more source

Stability-mediated epistasis constrains the evolution of an influenza protein. [PDF]

open access: yes, 2013
John Maynard Smith compared protein evolution to the game where one word is converted into another a single letter at a time, with the constraint that all intermediates are words: WORD→WORE→GORE→GONE→GENE. In this analogy, epistasis constrains evolution,
Bloom, Jesse D   +2 more
core   +1 more source

Two-stage genome-wide search for epistasis with implementation to Recombinant Inbred Lines (RIL) populations. [PDF]

open access: yesPLoS ONE, 2014
OBJECTIVE AND METHODS:This paper proposes an inegrative two-stage genome-wide search for pairwise epistasis on expression quantitative trait loci (eQTL).
Pavel Goldstein   +2 more
doaj   +1 more source

Role of epistasis on the fixation probability of a non-mutator in an adapted asexual population [PDF]

open access: yesJournal of Theoretical Biology 407 (2016) 225-237, 2016
The mutation rate of a well adapted population is prone to reduction so as to have a lower mutational load. We aim to understand the role of epistatic interactions between the fitness affecting mutations in this process. Using a multitype branching process, the fixation probability of a single non-mutator emerging in a large asexual mutator population ...
arxiv   +1 more source

Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies

open access: yesBMC Bioinformatics, 2008
Background Genome-wide association studies (GWAS) using single nucleotide polymorphism (SNP) markers provide opportunities to detect epistatic SNPs associated with quantitative traits and to detect the exact mode of an epistasis effect.
Garbe John R   +4 more
doaj   +1 more source

Exploring the effect of sex on empirical fitness landscapes [PDF]

open access: yes, 2009
The nature of epistasis has important consequences for the evolutionary significance of sex and recombination. Recent efforts to find negative epistasis as a source of negative linkage disequilibrium and associated long-term advantage to sex have yielded
Krug, J.   +2 more
core   +2 more sources

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