Results 31 to 40 of about 2,588,001 (311)

Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing

Nature Communications, 2023
Direct RNA sequencing using nanopore platform can be used to detect N6-methyladenosine (m6A) modifications on mRNAs. Here the authors systematically compare tools used for m6A detection from nanopore direct sequencing.
Zhen-Dong Zhong, Ying-Yuan Xie, Hong-Xuan Chen, Ye-Lin Lan, Xue-Hong Liu, Jing-Yun Ji, Fu Wu, Lingmei Jin, Jiekai Chen, Daniel W. Mak, Zhang Zhang, Guan-Zheng Luo   +11 more
doaj   +1 more source

The South American fruit fly : an important pest insect with RNAi-sensitive larval stages [PDF]

, 2019
RNA interference (RNAi) technology has been used in the development of approaches for pest control. The presence of some essential genes, the so-called "core genes," in the RNAi machinery is crucial for its efficiency and robust response in gene ...
Cagliari, Deise, Dias, Nayma, Kremer, Frederico Schmitt, Nava, Dori Edson, Rickes, Leticia Neutzling, Smagghe, Guy, Zotti, Moises   +6 more
core   +1 more source

High-precision mapping reveals rare N 6 -deoxyadenosine methylation in the mammalian genome

Cell Discovery, 2022
N 6-deoxyadenosine methylation (6mA) is the most widespread type of DNA modification in prokaryotes and is also abundantly distributed in some unicellular eukaryotes. However, 6mA levels are remarkably low in mammals.
Li-Qian Chen, Zhang Zhang, Hong-Xuan Chen, Jian-Fei Xi, Xue-Hong Liu, Dong-Zhao Ma, Yu-Hao Zhong, Wen Hui Ng, Tao Chen, Daniel W. Mak, Qi Chen, Yao-Qing Chen, Guan-Zheng Luo   +12 more
doaj   +1 more source

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers. [PDF]

, 2019
Microbial communities interplay with their environment through their functional traits that can be a response or an effect on the environment. Here, we explore how a functional trait-the decomposition of organic matter, can be addressed based on genetic ...
Barbi, Florian, Barry, Kerrie, Baskaran, Preetisri, Daum, Chris, Fauchery, Laure, Grigoriev, Igor V, Henrissat, Bernard, Ihrmark, Katarina, Kohler, Annegret, Kuo, Alan, LaButti, Kurt, Lindahl, Björn D, Lipzen, Anna, Martin, Francis, Morin, Emmanuelle   +14 more
core   +3 more sources

Identification and Transcriptomic Analyses of Two Endophytic Fungi WDR2 and WDR5 from Wild Soybean Elucidates Mechanistic Aspects of Alkali Stress Tolerance

Journal of Fungi
Soil alkalinization constitutes a significant abiotic stress factor that severely constrains global agricultural productivity. The application of alkali-tolerant endophytes represents a promising strategy for enhancing crop resilience. This study focused
Jiali Tian, Xuan Liu, Shixi Lu, Xuan Dong, Yujie Chen, Siqi Hou, Tianyu Lei, Xinyu Li, Ruixin Cao, Yue Su, Xiaodong Ding, Qiang Li, Jialei Xiao   +12 more
doaj   +1 more source

Gene body methylation patterns in Daphnia are associated with gene family size [PDF]

, 2016
The relation between gene body methylation and gene function remains elusive. Yet, our understanding of this relationship can contribute significant knowledge on how and why organisms target specific gene bodies for methylation.
Asselman, Jana, De Coninck, Dieter, De Schamphelaere, Karel, Pfrender, Michael E   +3 more
core   +2 more sources

Transcriptome and Physio-Biochemical Profiling Reveals Differentially Expressed Genes in Seedlings from Aerial and Subterranean Seeds Subjected to Drought Stress in Amphicarpaea edgeworthii Benth

Agronomy
Drought stress represents a prevalent environmental challenge that significantly impedes plant growth. The Chinese hog-peanut (Amphicarpaea edgeworthii Benth.), an amphicarpic legume, can produce both aerial seeds (ASs) and subterranean seeds (SSs ...
Jiancheng Kou, Yue Su, Tianyu Lei, Siqi Hou, Jiali Tian, Minglong Li, Shuzhen Zhang, Xiaodong Ding, Qiang Li, Jialei Xiao   +9 more
doaj   +1 more source

Cell Cycle Regulation by Alternative Polyadenylation of CCND1

Scientific Reports, 2018
Global shortening of 3′UTRs by alternative polyadenylation (APA) has been observed in cancer cells. However, the role of APA in cancer remains unknown.
Qiong Wang, Guopei He, Mengmeng Hou, Liutao Chen, Shangwu Chen, Anlong Xu, Yonggui Fu   +6 more
doaj   +1 more source

Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of Gene Sets [PDF]

, 2013
Gene annotation databases (compendiums maintained by the scientific community that describe the biological functions performed by individual genes) are commonly used to evaluate the functional properties of experimentally derived gene sets.
Girvan, Michelle, Glass, Kimberly
core   +2 more sources

DDX23, an Evolutionary Conserved dsRNA Sensor, Participates in Innate Antiviral Responses by Pairing With TRIF or MAVS

Frontiers in Immunology, 2019
DExD/H-box helicases play essential roles in RNA metabolism, and emerging data suggests that they have additional functions in antiviral immunity across species.
Jie Ruan, Yange Cao, Tao Ling, Peiyi Li, Shengpeng Wu, Dezhi Peng, Yao Wang, Xin Jia, Shangwu Chen, Anlong Xu, Anlong Xu, Shaochun Yuan, Shaochun Yuan   +12 more
doaj   +1 more source