An ILP solution for the gene duplication problem
BMC Bioinformatics, 2011 Background The gene duplication (GD) problem seeks a species tree that implies the fewest gene duplication events across a given collection of gene trees.
Fernández-Baca David F +3 more
doaj +1 more source
Reconstruction of the deep history of "Parent-Daughter" relationships among vertebrate paralogs [PDF]
arXiv, 2018 Gene duplication is a major mechanism through which new genetic material is generated. Although numerous methods have been developed to differentiate the ortholog and paralogs, very few differentiate the "Parent-Daughter" relationship among paralogous pairs.
arxiv
HETEROKARYON INCOMPATIBILITY GENES IN NEUROSPORA CRASSA DETECTED USING DUPLICATION-PRODUCING CHROMOSOME REARRANGEMENTS [PDF]
, 1975 O. M. Mylyk
openalex +1 more source
The inference of gene trees with species trees [PDF]
arXiv, 2013 Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history of species. Although the histories of genes and species are tightly linked, they are seldom identical, because genes duplicate, are lost or horizontally transferred, and ...
arxiv
THE USE OF DUPLICATION-GENERATING REARRANGEMENTS FOR STUDYING HETEROKARYON INCOMPATIBILITY GENES IN NEUROSPORA [PDF]
, 1975 David D. Perkins
openalex +1 more source
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models [PDF]
arXiv, 2019 Given a set of species whose evolution is represented by a species tree, a gene family is a group of genes having evolved from a single ancestral gene. A gene family evolves along the branches of a species tree through various mechanisms, including - but not limited to - speciation, gene duplication, gene loss, horizontal gene transfer.
arxiv
Rapid loss of duplicate gene expression by natural selection [PDF]
, 1979 Fred W. Allendorf
openalex +1 more source
Multiple gene duplication in the evolution of plasminogen. Five regions of sequence homology with the two internally homologous structures in prothrombin [PDF]
, 1976 H. Claeys +4 more
openalex +1 more source
Opsin gene duplication in Lepidoptera: retrotransposition, sex linkage, and gene expression [PDF]
Mol Biol Evol, 2023 Mulhair PO +4 more
europepmc +2 more sources
Evolution signatures in genome network properties [PDF]
, 2011 Genomes maybe organized as networks where protein-protein association plays the role of network links. The resulting networks are far from being random and their topological properties are a consequence of the underlying mechanisms for genome evolution ...
José +6 more
core +1 more source