Results 11 to 20 of about 7,080,207 (344)

DNA replication timing influences gene expression level [PDF]

Journal of Cell Biology, 2017
Eukaryotic genomes are replicated in a reproducible temporal order; however, the physiological significance is poorly understood. We compared replication timing in divergent yeast species and identified genomic features with conserved replication times. Histone genes were among the earliest replicating loci in all species.
Carolin A. Müller, Conrad A. Nieduszynski   +1 more
openaire   +3 more sources

Histone modification levels are predictive for gene expression [PDF]

Proceedings of the National Academy of Sciences, 2010
Histones are frequently decorated with covalent modifications. These histone modifications are thought to be involved in various chromatin-dependent processes including transcription. To elucidate the relationship between histone modifications and transcription, we derived quantitative models to predict the expression level of genes from histone ...
Karlic, R., Chung, H., Lasserre, J., Vlahovicek, K., Vingron, M.   +4 more
openaire   +3 more sources

Isoform level expression profiles provide better cancer signatures than gene level expression profiles [PDF]

Genome Medicine, 2013
Abstract Background The majority of mammalian genes generate multiple transcript variants and protein isoforms through alternative transcription and/or alternative splicing, and the dynamic changes at the transcript/isoform level between non-oncogenic and cancer cells remain largely unexplored.
Zhang, ZhongFa, Pal, Sharmistha, Bi, Yingtao, Tchou, Julia, Davuluri, Ramana V   +4 more
openaire   +2 more sources

Floral pathway integrator gene expression mediates gradual transmission of environmental and endogenous cues to flowering time [PDF]

PeerJ, 2017
The appropriate timing of flowering is crucial for the reproductive success of plants. Hence, intricate genetic networks integrate various environmental and endogenous cues such as temperature or hormonal statues.
Aalt D.J. van Dijk, Jaap Molenaar
doaj   +2 more sources

Expressive genomic hybridisation: gene expression profiling at the cytogenetic level [PDF]

Molecular Pathology, 2003
To describe a cytogenetic technique suitable for the rapid assessment of global gene expression that is based on comparative genomic hybridisation (CGH), and to use it to understand the relation between genetic amplifications and gene expression.Whereas traditional CGH uses DNA as test and reference in hybridisations, expressive genomic hybridisation ...
F, Al-Mulla, M, Al-Maghrebi, G, Varadharaj   +2 more
openaire   +2 more sources

pRRophetic: An R Package for Prediction of Clinical Chemotherapeutic Response from Tumor Gene Expression Levels

PLoS ONE, 2014
We recently described a methodology that reliably predicted chemotherapeutic response in multiple independent clinical trials. The method worked by building statistical models from gene expression and drug sensitivity data in a very large panel of cancer
P. Geeleher, N. Cox, R. S. Huang, J. Barbour   +3 more
semanticscholar   +1 more source

A microfluidic processor for gene expression profiling of single human embryonic stem cells [PDF]

, 2008
The gene expression of human embryonic stem cells (hESC) is a critical aspect for understanding the normal and pathological development of human cells and tissues.
Chen, Yan, Marcus, Joshua S., Quake, Stephen R., Scherer, Axel, Taylor, Clive R., Weiner, Leslie P., Zhong, Jiang F.   +6 more
core   +1 more source

Genetic effects on gene expression across human tissues

Nature, 2017
Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases.
François Andrew A. Stephane E. Joe R. Yuan Brian Pejman YoS Aguet Brown Castel Davis He Jo Mohammadi Park Pars, François Andrew A. Stephane E. Joe R. Yuan Brian Pejman YoS Aguet Brown Castel Davis He Jo Mohammadi Park Pars, F. Aguet, Andrew A. Brown, S. Castel, Joe R. Davis, Yuan He, Brian Jo, P. Mohammadi, YoSon Park, P. Parsana, A. Segrè, B. Strober, Zachary Zappala, Beryl B. Ellen T. Kane Katherine H. Monkol Xiao Jared L. Cummings Gelfand Hadley Huang Lek Li Nedzel Nguyen, Beryl B. Cummings, Ellen T. Gelfand, Kane Hadley, Katherine H. Huang, M. Lek, Xiao Li, Jared L. Nedzel, Duyen Y. Nguyen, M. Noble, Timothy J. Sullivan, T. Tukiainen, D. MacArthur, Gad Getz, Anjene Ping Susan A. Roger Nicole C. Helen M. Abhi Jeffer Addington Guan Koester Little Lockhart Moore Rao S, A. Addington, P. Guan, Susan E. Koester, A. R. Little, N. Lockhart, Helen M. Moore, Abhilasha Rao, Jeffery P. Struewing, Simona Volpi, Lori E. Richard Marcus Christopher Mark Gene William F. Brigham Hasz Hunter Johns Johnson Kopen Leinweber , L. Brigham, R. Hasz, Marcus Hunter, Christopher Johns, Mark Johnson, G. Kopen, W. F. Leinweber, J. Lonsdale, Alisa McDonald, Bernadette Mestichelli, K. Myer, Brian Roe, Mike Salvatore, Saboor Shad, Jeffrey A. Thomas, Gary Walters, Michael Washington, Joseph Wheeler, J. Bridge, B. Foster, Bryan M. Gillard, E. Karasik, Rachna Kumar, Mark Miklos, M. T. Moser, Scott D. Jewell, Robert G. Montroy, D. Rohrer, Dana R. Valley, Deborah C. Mash, David A. Davis, Leslie Mary E. Philip A. Sobin Barcus Branton, L. Sobin, M. Barcus, P. Branton, Nathan S. Brunilda Olivier Laure Eric R. Diego Ariel D. H Abell Balliu Delaneau Frésard Gamazon Garrido-Mart, Nathan S. Abell, B. Balliu, O. Delaneau, L. Frésard, Eric R. Gamazon, D. Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Buhm Han, Amy Z. He, F. Hormozdiari, Xin Li, Boxiang Liu, Eun Yong Kang, Ian C. McDowell, H. Ongen, John Palowitch, Christine B. Peterson, G. Quon, S. Ripke, A. Saha, A. A. Shabalin, Tyler C. Shimko, J. Sul, Nicole A. Teran, Emily K. Tsang, Hailei Zhang, Yi-Hui Zhou, C. Bustamante, Nancy J. Cox, R. Guigó, M. Kellis, M. McCarthy, Don Conrad, E. Eskin, Gen Li, A. Nobel, C. Sabatti, Barbara E. Stranger, Xiaoquan Wen, Fred A. Wright, K. Ardlie, E. Dermitzakis, T. Lappalainen, François Kristin G. Beryl B. Ellen T. Gad Kane Robert E. Ka Aguet Ardlie Cummings Gelfand Getz Hadley Handsake, F. Aguet, K. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, R. Handsaker, Katherine H. Huang, Seva Kashin, K. Karczewski, M. Lek, Xiao Li, D. MacArthur, Jared L. Nedzel, D. Nguyen, M. Noble, A. Segrè, Casandra A. Trowbridge, T. Tukiainen, Nathan S. Brunilda Ruth Omer Alexis Gireesh K. Andrew Chr Abell Balliu Barshir Basha Battle Bogu Brown Brown, Ruth Barshir, Omer Basha, A. Battle, G. Bogu, Andrew A. Brown, Christopher D. Brown, Lin S. Chen, Colby Chiang, Don Conrad, Nancy J. Cox, Farhan N. Damani, B. Engelhardt, E. Eskin, Pedro G. Ferreira, L. Frésard, Eric R. Gamazon, D. Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, R. Guigó, I. Hall, Buhm Han, F. Hormozdiari, C. Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Yungil Kim, Sarah Kim-Hellmuth, Boxiang Liu, S. Mangul, Ian C. McDowell, Jean Monlong, Stephen B. Montgomery, Manuel Muñoz-Aguirre, Anne W. Ndungu, Dan L. Nicolae, Meritxell Oliva, N. Panousis, Panagiotis K. Papasaikas, YoSon Park, Anthony J. Payne, J. Quan, F. Reverter, M. Sammeth, Alexandra J. Scott, A. A. Shabalin, Reza Sodaei, M. Stephens, Barbara E. Stranger, Sarah Urbut, M. van de Bunt, Gao Wang, Fred A. Wright, H. Xi, Esti Yeger-Lotem, Judith B. Zaugg, Yi-Hui Zhou, Joshua M. Daniel Joanne Lin S. Melina Kathryn Morgan Jenn Akey Bates Chan Chen Claussnitzer Demanelis Diegel, J. Akey, Daniel Bates, Joanne Chan, M. Claussnitzer, Kathryn Demanelis, Morgan Diegel, J. Doherty, A. Feinberg, Maria S. Fernando, J. Halow, Kasper D. Hansen, E. Haugen, P. Hickey, Lei Hou, F. Jasmine, Ruiqi Jian, Lihua Jiang, Audra K. Johnson, R. Kaul, M. Kellis, M. Kibriya, Kristen Lee, Jin Billy Li, Qin Li, Xiao Li, Jessica Lin, Shin Lin, Sandra Linder, C. Linke, Yaping Liu, Matthew T. Maurano, B. Molinie, Stephen B. Montgomery, Jemma Nelson, Fidencio J. Neri, Yongjin P. Park, B. Pierce, Nicola J. Rinaldi, L. Rizzardi, R. Sandstrom, Andrew D. Skol, Kevin S. Smith, Michael P. Snyder, J. Stamatoyannopoulos, Hua Tang, L. Wang, M. Wang, Nicholas Van Wittenberghe, Fan Wu, Rui Zhang, C. Nierras, Philip A. Latarsha J. Ping Helen M. Abhi Jimmie B. Branton Carithers Guan Moore Rao Vaught, P. Branton, Latarsha J. Carithers, P. Guan, Helen M. Moore, Abhilasha Rao, J. Vaught, Sarah E. Nicole C. Casey Jeffery P. Simona Gould Lockart Martin Struewing Volpi, Sarah E. Gould, Nicole C. Lockart, Casey Martin, Jeffery P. Struewing, Simona Volpi, Anjene M. Susan E. Addington Koester, A. Addington, Susan E. Koester, A. R. Little, Lori E. Richard Marcus Christopher Mark Gene William F. Brigham Hasz Hunter Johns Johnson Kopen Leinweber , L. Brigham, Mark Johnson, Brian Roe, Gary Walters, Michael Washington, Jason Barbara A. Bryan M. Ellen Rachna Mark Michael T. Bridge Foster Gillard Karasik Kumar Miklos Moser, Scott D. Robert G. Daniel C. Dana R. Jewell Montroy Rohrer Valley, Scott D. Jewell, Robert G. Montroy, D. Rohrer, Dana R. Valley, David A. Deborah C. Davis Mash, David A. Davis, Deborah C. Mash, Anita H. Anna M. David E. Nancy V. Jeffrey A. Negin Karn Undale Smith Tabor Roche McLean Vatanian Robinson , Anita H. Undale, Anna M. Smith, D. Tabor, Nancy V. Roche, J. McLean, Negin Vatanian, Karna L. Robinson, L. Sobin, M. Barcus, Kimberly M. Valentino, L. Qi, Steven Hunter, P. Hariharan, Shilpi Singh, K. S. Um, Takunda Matose, M. Tomaszewski, Laura K. Maghboeba Laura A. Heather M. Barker Mosavel Siminoff Traino, Laura K. Barker, M. Mosavel, L. Siminoff, H. Traino, Paul Thomas Magali Dan Kieron Stephen J. Daniel R. Flicek Juettemann Ruffier Sheppard Taylor Trevanio, Paul Flicek, Thomas Juettemann, Magali Ruffier, Daniel Sheppard, K. Taylor, S. Trevanion, D. Zerbino, Brian Mary Maximilian W. James Christopher M. Benedict K Craft Goldman Haeussler Kent Lee Paten Rosenbloom , Brian Craft, M. Goldman, M. Haeussler, W. Kent, Christopher M. Lee, B. Paten, K. Rosenbloom, John Vivian, Jingchun Zhu   +324 more
semanticscholar   +1 more source

Parallelism and divergence in immune responses: a comparison of expression levels in two lakes [PDF]

, 2014
Question: How do immune phenotypes differ between infected and uninfected wild individuals, and is the effect the same in different populations? Organisms: Threespine stickleback (Gasterosteus aculeatus) from two lake populations on the island of North ...
Ando, Ando, Anquetin, Anquetin, Baba, Bass, Berx, Berx, Berx, Birchmeier, Bracke, Brown, Chen, Christofori, Cukierman, David, Dias, Efstathiou, Gaul, Gaul, Gottlieb, Hedley, Ju, Lecomte, Machado, Maddess, Majchrzak, Morton, Morton, Munro, Nobis, Oskarsson, Reymond, Reymond, Risinger, Serrels, Shan, Sprague, Thiery, Timpson, Timpson, Trost, Umbas, Zhou   +43 more
core   +2 more sources

Quantifying genetic effects on disease mediated by assayed gene expression levels

Nature Genetics, 2019
Disease variants identified by genome-wide association studies (GWAS) tend to overlap with expression quantitative trait loci (eQTLs), but it remains unclear whether this overlap is driven by gene expression levels ‘mediating’ genetic effects on disease.
Douglas W. Yao, L. O'Connor, A. Price, A. Gusev   +3 more
semanticscholar   +1 more source