RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. [PDF]
, 2012 Web services application programming interface (API) was developed to provide a programmatic access to the regulatory interactions accumulated in the RegPrecise database (http://regprecise.lbl.gov), a core resource on transcriptional regulation for the ...
Arkin, Adam P +6 more
core +2 more sources
BMC Plant Biology, 2019 Background The WOX (WUSCHEL-RELATED HOMEOBOX) gene family encodes a class of transcription factors that are unique to green plants, where they are involved in regulating the development of plant tissues and organs by determining cell fate.
Peng He +6 more
doaj +1 more source
Co-Regulated Genes and Gene Clusters [PDF]
Genes, 2021 There are many co-regulated genes in eukaryotic cells. The coordinated activation or repression of such genes occurs at specific stages of differentiation, or under the influence of external stimuli. As a rule, co-regulated genes are dispersed in the genome. However, there are also gene clusters, which contain paralogous genes that encode proteins with
Sergey V. Razin +3 more
openaire +2 more sources
Rrp6 Regulates Heterochromatic Gene Silencing via ncRNA RUF6 Decay in Malaria Parasites
mBio, 2020 The heterochromatin environment plays a central role in silencing genes associated with the malaria parasite’s development, survival in the host, and transmission to the mosquito vector.
Yanting Fan +18 more
doaj +1 more source
A novel two-component system involved in the transition to secondary metabolism in Streptomyces coelicolor. [PDF]
PLoS ONE, 2012 BACKGROUND: Bacterial two-component signal transduction regulatory systems are the major set of signalling proteins frequently mediating responses to changes in the environment.
Daniel Rozas +2 more
doaj +1 more source
Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains [PDF]
, 2013 BACKGROUND: Mycobacterium avium subspecies paratuberculosis (MAP) whole cell vaccines have been widely used tools in the control of Johne's disease in animals despite being unable to provide complete protection. Current vaccine strains derive from stocks
Bull, TJ +7 more
core +1 more source
Combinatorial Gene Regulation Using Auto-Regulation
PLoS Computational Biology, 2010 As many as 59% of the transcription factors in Escherichia coli regulate the transcription rate of their own genes. This suggests that auto-regulation has one or more important functions. Here, one possible function is studied. Often the transcription rate of an auto-regulator is also controlled by additional transcription factors.
R. Hermsen (Rutger) +2 more
openaire +5 more sources
Causal inference of regulator-target pairs by gene mapping of expression phenotypes
BMC Genomics, 2006 Background Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, then loci involved in regulatory control can theoretically be implicated ...
Jagalur Manjunatha, Kulp David C
doaj +1 more source
Cell, 2014 Reference EPFL-ARTICLE-198028doi:10.1016/j.cell.2014.01.060View record in Web of Science Record created on 2014-04-02, modified on 2017-05 ...
Andrey, Guillaume, Duboule, Denis
openaire +3 more sources
Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp strain PCC 7120 to combined-nitrogen deprivation [PDF]
, 2011 Background: Cyanobacteria are potential sources of renewable chemicals and biofuels and serve as model organisms for bacterial photosynthesis, nitrogen fixation, and responses to environmental changes. Anabaena (Nostoc) sp.
Flaherty, Britt L +3 more
core +3 more sources