Results 11 to 20 of about 1,479,681 (326)
Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes
Insects, 2021 Genome sequencing of a diverse array of arthropod genomes is already underway, and these genomes will be used to study human health, agriculture, biodiversity, and ecology.
Surya Saha +4 more
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Prokka: rapid prokaryotic genome annotation [PDF]
Bioinformatics, 2014 Abstract Summary: The multiplex capability and high yield of current day DNA-sequencing instruments has made bacterial whole genome sequencing a routine affair. The subsequent de novo assembly of reads into contigs has been well addressed.
Torsten Seemann
semanticscholar +3 more sources
bioRxiv, 2023 Gene prediction has remained an active area of bioinformatics research for a long time. Still, gene prediction in large eukaryotic genomes presents a challenge that must be addressed by new algorithms.
L. Gabriel +6 more
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bioRxiv, 2020 Full automation of gene prediction has become an important bioinformatics task since the advent of next generation sequencing. The eukaryotic genome annotation pipeline BRAKER1 had combined self-training GeneMark-ET with AUGUSTUS to generate genes ...
Tomás Bruna +4 more
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Functional genome Annotation in Bacterial infections: A Review [PDF]
Al Ameen Journal of Medical Sciences, 2021 Functional annotation provides the information of gene about its biological identity and various types of molecular function and biological role like sub-cellular location and its expression.
Sharique Ahmad +3 more
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Evaluation of three automated genome annotations for Halorhabdus utahensis. [PDF]
PLoS ONE, 2009 Genome annotations are accumulating rapidly and depend heavily on automated annotation systems. Many genome centers offer annotation systems but no one has compared their output in a systematic way to determine accuracy and inherent errors. Errors in the
Peter Bakke +12 more
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Best Practices for Comprehensive Annotation of Neuropeptides of Gryllus bimaculatus
Insects, 2023 Genome annotation is critically important data that can support research. Draft genome annotations cover representative genes; however, they often do not include genes that are expressed only in limited tissues and stages, or genes with low expression ...
Takako Mochizuki +8 more
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Progress, challenge and prospect of plant plastome annotation
Frontiers in Plant Science, 2023 The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Xiao-Jian Qu +6 more
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NCBI prokaryotic genome annotation pipeline
Nucleic Acids Research, 2016 Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across ...
T. Tatusova +9 more
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Efficient homology‐based annotation of transposable elements using minimizers
Applications in Plant Sciences, 2023 Premise Transposable elements (TEs) make up more than half of the genomes of complex plant species and can modulate the expression of neighboring genes, producing significant variability of agronomically relevant traits.
Laura Natalia Gonzalez‐García +4 more
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