Results 41 to 50 of about 495,544 (318)

Genome sequence of the Lebeckia ambigua-nodulating 'Burkholderia sprentiae' strain WSM5005T [PDF]

, 2013
"Burkholderia sprentiae" strain WSM5005(T) is an aerobic, motile, Gram-negative, non-sporeforming rod that was isolated in Australia from an effective N-2-fixing root nodule of Lebeckia ambigua collected in Klawer, Western Cape of South Africa, in ...
Ardley, Julie, Bruce, David, Chen, I-Min, De Meyer, Sofie, Detter, Chris, Goodwin, Lynne, Han, Cliff, Han, James, Howieson, John, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Lu, Megan, Markowitz, Victor, Mavromatis, Konstantinos, Melino, Vanesssa, Mikhailova, Natalia, O'Hara, Graham, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Pitluck, Sam, Reeve, Wayne, Rui, Tian, Szeto, Ernest, Tapia, Roxanne, Terpolilli, Jason, Tiwari, Ravi, Wei, Chia-Lin, Woyke, Tanja, Yates, Ron   +31 more
core   +1 more source

Genome (re‐)annotation and open‐source annotation pipelines [PDF]

Microbial Biotechnology, 2010
These days, more and more scientists are diving into genome sequencing projects, urged by fast and cheap next‐generation sequencing technologies. Only to discover that they are quickly drowning in an unfathomable sea of sequence data and gasping for help from experts to make biological sense of this ensuing disaster.
Siezen, R.J., Hijum, S.A.F.T. van
openaire   +4 more sources

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. [PDF]

, 2014
The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation.
Covington, Michael F, Devisetty, Upendra Kumar, Lekkala, Saradadevi, Maloof, Julin N, Tat, An V   +4 more
core   +1 more source

BarkBase: Epigenomic Annotation of Canine Genomes [PDF]

Genes, 2019
Dogs are an unparalleled natural model for investigating the genetics of health and disease, particularly for complex diseases like cancer. Comprehensive genomic annotation of regulatory elements active in healthy canine tissues is crucial both for identifying candidate causal variants and for designing functional studies needed to translate genetic ...
Lynne J. Anguish, Ross Swofford, Vicki N. Meyers-Wallen, Xue Li, Xue Li, Kate Megquier, Kerstin Lindblad-Toh, Kerstin Lindblad-Toh, Michele Koltookian, Kathleen Morrill, Kathleen Morrill, Elinor K. Karlsson, Elinor K. Karlsson, Claire R. Sharp, Jacob Alonso, Brittney Logan, Jeremy Johnson, Andrew M. Hoffman, Diane P. Genereux, Jessica P. Hekman, Lluís Ferrer, Jason Turner-Maier   +21 more
openaire   +6 more sources

Scalable and versatile container-based pipelines for de novo genome assembly and bacterial annotation. [version 1; peer review: 2 approved, 1 approved with reservations]

F1000Research, 2023
Background: Advancements in DNA sequencing technology have transformed the field of bacterial genomics, allowing for faster and more cost effective chromosome level assemblies compared to a decade ago.
Tatiana Amabile de Campos, Georgios Joannis Pappas Jr, Felipe Marques de Almeida   +2 more
doaj   +1 more source

PANNOTATOR:an automated tool for annotation of pan-genomes [PDF]

, 2013
Due to next-generation sequence technologies, sequencing of bacterial genomes is no longer one of the main bottlenecks in bacterial research and the number of new genomes deposited in public databases continues to increase at an accelerating rate.
Abdelzaher, A, Azevedo, V, Barbosa, Eudes Guilherme Vieria, Barh, D, Barve, N, Chaitankar, V, Fiaux, K, Ghosh, P, Jain, N, Kamapantula, B, Miyoshi, A, Santos, A R, Silva, A, Tiwari, S, Zurita-Turk, M   +14 more
core   +1 more source

The genome sequence of the common toad, Bufo bufo (Linnaeus, 1758) [version 1; peer review: 2 approved]

Wellcome Open Research, 2021
We present a genome assembly from an individual male Bufo bufo (the common toad; Chordata; Amphibia; Anura; Bufonidae). The genome sequence is 5.04 gigabases in span. The majority of the assembly (99.1%) is scaffolded into 11 chromosomal pseudomolecules.
Jeffrey W. Streicher
doaj   +1 more source

AnnoTrack - a tracking system for genome annotation

BMC Genomics, 2010
Background As genome sequences are determined for increasing numbers of model organisms, demand has grown for better tools to facilitate unified genome annotation efforts by communities of biologists. Typically this process involves numerous experts from
Hubbard Tim, Harrow Jennifer, Kokocinski Felix   +2 more
doaj   +1 more source

GNPAnnot community annotation system applied to sugarcane bac clone sequences (W572) [PDF]

, 2011
A large amount of data is being produced by current genome sequencing projects. Sequence annotations and analyses need to be organized into databases and widely accessible.
Bocs, Stéphanie, Charron, Carine, D'Hont, Angélique, Droc, Gaëtan, Garsmeur, Olivier, Guignon, Valentin   +5 more
core  

Multiple tests of association with biological annotation metadata

, 2008
We propose a general and formal statistical framework for multiple tests of association between known fixed features of a genome and unknown parameters of the distribution of variable features of this genome in a population of interest.
Mark J. Van Der Laan, Mark J. Van Der Laan, Rine Dudoit, Rine Dudoit Sunduz Keles, Sunduz Keles   +4 more
core   +2 more sources