Results 11 to 20 of about 3,706,718 (308)

GENOME TREES AND THE NATURE OF GENOME EVOLUTION [PDF]

Annual Review of Microbiology, 2005
Genome trees are a means to capture the overwhelming amount of phylogenetic information that is present in genomes. Different formalisms have been introduced to reconstruct genome trees on the basis of various aspects of the genome. On the basis of these aspects, we separate genome trees into five classes: (a) alignment-free trees based on statistic ...
Snel, B., Huynen, M.A., Dutilh, B.E.
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Genome Graphs and the Evolution of Genome Inference [PDF]

Genome Research, 2017
Abstract The human reference genome is part of the foundation of modern human biology, and a monumental scientific achievement. However, because it excludes a great deal of common human variation, it introduces a pervasive reference bias into the field of human genomics.
Paten, Benedict, Novak, Adam M., Eizenga, Jordan M., Erik, Garrison   +3 more
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Ancient Polyploidy and Genome Evolution in Palms [PDF]

, 2019
Mechanisms of genome evolution are fundamental to our understanding of adaptation and the generation and maintenance of biodiversity, yet genome dynamics are still poorly characterized in many clades.
Bacon, Christine D.,, Sinn, Brandon T., Ge, Xue Jun, Bacon, Christine D., Barrett, Craig F, Barrett, Craig F., McKain, Michael, Bacon, Christine, Barrett, Craig, Ge, Xue-Jun, Antonelli, Alexandre, Zhang, Yuqu, Ge, X. J., Zhang, Y. Q., McKain, M. R., Antonelli, Alexandre,, Sinn, B. T., McKain, Michael R., Sinn, Brandon, Barrett, C. F.   +19 more
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Genome Evolution in Plants: Complex Thalloid Liverworts (Marchantiopsida)

, 2023
Why do some genomes stay small and simple, while others become huge, and why are some genomes more stable? In contrast to angiosperms and gymnosperms, liverworts are characterized by small genomes with low variation in size and conserved chromosome ...
Singh, Shilpi, Eklund, D. Magnus, Eklund, Magnus, Cronberg, Nils,, Lagercrantz, Ulf,, Linde, Anna-Malin, Eklund, Magnus,, Linde, Anna Malin, Cronberg, Nils, Linde, Anna-Malin,, Lagercrantz, Ulf, Bowman, John L., Singh, Shilpi,, Bowman, John L.,   +13 more
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Rings Reconcile Genotypic and Phenotypic Evolution within the Proteobacteria [PDF]

, 2015
Although prokaryotes are usually classified using molecular phylogenies instead of phenotypes after the advent of gene sequencing, neither of these methods is satisfactory because the phenotypes cannot explain the molecular trees and the trees do not fit
Pu, Yiyi, Sarna, Brooke, Sinsheimer, Janet S., Larsen, Joseph, de la Haba, Rafael R., de la Haba, Rafael R, Ruiz de la Haba, Rafael, Lake, James A., Lake, James A, Zhao, Jun, Sinsheimer, Janet S, Koo, Hyun-min, Koo, HyunMin   +12 more
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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. [PDF]

, 2011
BACKGROUND: We present the genome sequence of the tammar wallaby, Macropus eugenii, which is a member of the kangaroo family and the first representative of the iconic hopping mammals that symbolize Australia to be sequenced.
Wood, Dav, Chew, Keng, Graves, Jennifer A Marshall, Hickford, D., Wang, Jianghui, Shinji Kondo, Margaret B Morgan, Nanette Y Schneider, Nicholas, Frank W., Lara, F, Artem Men, Nazareth, Lynne, Christie L Kovar, Lefevre, CM, Lora R Lewis, Renfree, MB, McColl, KA, Hore, TA, Edson, J, Suzuki, Yutaka, Paul Flicek, Okwuonu, Geoffrey, Flicek, Paul, Pharo, Elizabeth A., Anthony T Papenfuss, Danielle Hickford, Troon, C, Benjamin Lansdell, Wong, Emily S. W., Liu, Y, Kaighin A McColl, Jessica M Stringer, Andrew Cree, Graves, Jennifer A.M., Schneider, NY, Santibanez, J, Herrero, J, Wu, Chen, Liu, Yue, Lewis, Lora, Siddle, Hannah, Hazar-Rethinam, Mehlika, Nicholas, Kevin, Hazar-Rethinam, Mehlike, Fujiyama, Asao, Speed, Terence, Wong, ESW, Richard A Gibbs, Heider, T, Yapa, L, Hsu, Arthur, Wakefield, MJ, Nicholas, K.R., Speed, Terence P., Menzies, Brandon, Delbridge, Margaret L., Schneider, Nanette Y., Jireh Santibanez, Wilson, P, Patel, HR, Gibbs, Richard A, Nishida, Y, Swwong, E, Hongshi Yu, Elizabeth Kuczek, Kuczek, Elizabeth, Troon, Carmen, Sundaravadanam, Yogi, Flicek, P, Fowler, G, Siddle, Hannah V., Cocks, BG, Shoji Tatsumoto, Okwuonu, GO, Papenfuss, AT, Wood, David, Lefèvre, Christophe M., Mohammadi, A, Weinstock, G, Kuroki, Yuko, Deng, Jixin, Tatsumoto, S, et al., Rens, Willem, Deakin, JE, Joshi, V, Frankenberg, Stephen R., Cooper, Desmond, Siddle, HV, Kathryn Beal, Renfree, M. B., James Lindsay, Dinh, HH, Pharo, E.A., Menzies, Brandon R., Yu, HS, Chew, Keng Yih, Forrest, SM, Sugano, Sumio, Kuczek, E, Asao Fujiyama, Wakefield, Matthew J., Annette McGrath, Mohammadi, Amir, Emily SW Wong, John Davis, Graves, JAM, Jing, C, Carmen Troon, Rachel J O'Neill, Hsu, A, Ferguson-Smith, Malcolm, Vandita Joshi, Muzny, Donna M., Lefèvre, Christopher P., Song, Xing-Zhi, Janette Edson, Susan M Forrest, Mandiou, Ion, Frankenberg, SR, Daniel Thomas, Short, Kirsty, Shen, Joshua, Hore, Timothy A., Kuroki, Yoko, Thomas Heider, Shalini N Jhangiani, Hu, Y, Dawn M Carone, Stringer, Jessica, Gerald Fowler, Matthew J Wakefield, Belov, Katherine, Graves, Jennifer A. M., Lewis, Lora R., Nadaf, Shafagh, Pask, Andrew, Yanqiu Hu, Short, Kirsty R., Feng, ZP, Lewis, LR, Song, XZ, Wakefield, Matthew, Waters, P.D., Muzny, Donna, Carone, Dawn M., Malcolm Ferguson-Smith, Wong, ESW ; https://orcid.org/, Wong, Emily S.W., Wilson, Peter, Wu, C, Desmond W Cooper, Nicholas, Frank, McColl, Kaighin A., Jennifer A M Graves, Nazareth, L, Cooper, Desmond W., Nicholas, KR, Cree, Andrew, Yu, H, Muzny, Donna M, Mehlika Hazar-Rethinam, Shen, Joshua Y., Rens, W., Wakefield, M.J., Okwuonu, Geoffrey O., Wong, Emily, Huyen H Dinh, Tanya Levchenko, Cooper, Desmond W, Kuroki, Y, Zenger, K, Yuichiro Nishida, Shaw, G, O'Hara, William, Zenger, KR, Weinstock, George, Pharo, E, Chew, Keng Y., Xing-Zhi Song, McGrath, A, Kovar, Christie, Dinh, Huyen, Waters, Paul D., Shafagh Al Nadaf, Renfree, M.B., Nicholas, FW, Arthur Hsu, Thornton, R, Santibanez, Jireh, Lansdell, Benjamin, Geoff Shaw, Chen, L, Muzny, DM, Chenwei Wang, Kyall R Zenger, O'Neill, Rachel, Elizabeth A Pharo, Wong, E.S.W., San Ruiz, Lefèvre, C.M., Willem Rens, Kovar, Christie L., Yutaka Suzuki, Fremiet Lara, Dinh, Huyen H., Cree, A, Wang, Chenwei, Jixin Deng, Al Nadaf, Shafagh, Graves, Jennifer, Ruiz, San J., Gibbs, RA, William O'Hara, Deakin, J.E., Kondo, Shinji, Renfree, Marilyn B., Cooper, DW, Allison Hall, Kim C Worley, Toyoda, Atsushi, Frankenberg, Stephen, Sugano, S, Timothy A Hore, Brandon R Menzies, Gibbs, Richard A., Chew, KY, Jhangiani, SN, Sumio Sugano, Kovar, CL, Lindsay, James, Hall, Allison, O’Neill, Rachel, Hall, A, Zenger, Kyall R., Stringer, JM, Lewis, Lora R, Christophe M Lefèvre, Searle, Stephen, Janine E Deakin, Short, KR, Wang, C, Wang, J, O'Neill, RJ, Heider, T., Gibbs, Richard, Zenger, K.R., Sarah Williams, Thomas, Daniel, Toyoda, A, Stephen MJ Searle, Morgan, Margaret B, Feng, Z-P, Donna M Muzny, Hannah V Siddle, Williams, S, Zhi-Ping Feng, Morgan, Margaret B., Fairley, S, Levchenko, T, Waters, PD, Davis, J, Shunsuke Suzuki, Hazar-Rethinam, M, Yu, Hongshi, Jing, Chyn, Rebecca Thornton, Amber Stephens, M Graves, Jennifer A., Forrest, Susan M., Chyn Jing, Wood, D, Shaw, G., Pharo, Elizabeth, Kuroki, Y., M Graves, JA, Lei Chen, Shen, JY, Dinh, Huyen H, Jianghui Wang, Chen, Lei, Searle, SMJ, Yoshiyuki Sakaki, Yoko Kuroki, DEAKIN, Janine; id_orcid, Ion Mandiou, Ferguson-Smith, M, Carone, DM, Nicholas, F.W., Deakin, Janine, Joshua Y Shen, Worley, Kim C., Belov, K, Okwuonu, Geoffrey O, Ruiz, SJ, Shen, Joshua Y, Stephens, Amber, McGrath, Annette, Delbridge, ML, Thomas, D, Sakaki, Yoshiyuki, McColl, Kaighin, Searle, Stephen M. J., Hickford, D, Speed, TP, Men, A, Nishida, Yuichiro, Jhangiani, Shalini N, Al Nadaf, S ; https://orcid.org/, Lindsay, J, Papenfuss, Anthony, Tatsumoto, Shoji, Stephens, A, Chen Wu, Ferguson-Smith, M., Men, Artem, Fairley, Susan, Lynne Nazareth, Searle, Stephen M.J., Jhangiani, Shalini, Jhangiani, Shalini N., Susan Fairley, Deakin, Janine E., Davis, John, David Wood, Thornton, Rebecca, Hickford, Danielle, Lansdell, B, Shaw, Geoff, Hu, Yanqiu, Worley, KC, Keng Chew, Joshi, Vandita, Waters, P, Cocks, Benjamin G., Sundaravadanam, Y, Deng, J, Marilyn B Renfree, Nicholas, Kevin R., Pask, Andrew J., Frank W Nicholas, Heider, Thomas, Fujiyama, A, Margaret L Delbridge, Carone, Dawn, Stringer, Jessica M., Rens, W, Kevin R Nicholas, Waters, PD ; https://orcid.org/, Atsushi Toyoda, Wang, C., Fowler, Gerald, Belov, K., Al Nadaf, S, Edson, Janette, Geoffrey O Okwuonu, Hore, Timothy, Papenfuss, A.T., Andrew J Pask, Levchenko, Tanya, Renfree, Marilyn, Schneider, Nanette, Lindsay, J., Kirsty R Short, Pharo, EA, Herrero, Javier, O'Hara, W, Zenger, Kyall, Kovar, Christie L, Forrest, Susan, Terence P Speed, Pask, AJ, Ruiz, San, Benjamin G Cocks, Paul D Waters, Lefevre, Christophe, Suzuki, Y, Suzuki, S, Yapa, Lankesha, Beal, Kathryn, George Weinstock, Amir Mohammadi, Stephen R Frankenberg, Wang, CW, Menzies, BR, Morgan, MB, Worley, Kim, Lara, Fremiet, Speed, Terence P, Katherine Belov, Waters, Paul, Papenfuss, Anthony T., Feng, Zhi-Ping, Peter Wilson, Suzuki, Shunsuke, O'Neill, Rachel J., Yue Liu, Sakaki, Y, Delbridge, Margaret, Yogi Sundaravadanam, Williams, Sarah, Fowler, Gerard, Song, X-Z, Javier Herrero, Mandiou, I, Cocks, Benjamin, Lankesha Yapa, Beal, K, Morgan, Margaret, Lefevre, Christopher M., Kondo, S   +410 more
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The genomics evolution [PDF]

Nature Reviews Drug Discovery, 2004
As a result of the need to transform into drug discovery companies, genomics companies have had to change their recruitment models.
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The genome of the obligate intracellular parasite Trachipleistophora hominis : new insights into microsporidian genome dynamics and reductive evolution [PDF]

, 2012
The dynamics of reductive genome evolution for eukaryotes living inside other eukaryotic cells are poorly understood compared to well-studied model systems involving obligate intracellular bacteria.
Thomas Weinmaier (124598), Hall, Neil (Department of Functional and Comparative Genomics, School of Biological Sciences, University of Liverpool), Bernhardt Jörg, Robert P Hirt, Hacker Christian, Swan, Daniel C., Robert P. Hirt (124609), Weinmaier, Thomas, Nakjang, Sirintra, Rattei, Thomas, Harris, Simon R. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Noël Christophe J., Noel, Christophe J., Embley, T. Martin, John M. Lucocq (124603), Christian Hacker (124601), Hirt, Robert P. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Christophe J. Noël (124592), Lucocq, John M., Stephanie Markert, Tom A. Williams, Embley T. Martin, Neil Hall, Nakjang Sirintra, Williams Tom A., Sirintra Nakjang (124590), Dagan Tal, Martin Embley, John M Lucocq, Rattei, Thomas (University of Vienna), Goldberg Alina V., Tom A Williams, Dagan, Tal (Institute for Molecular Evolution, Heinrich Heine University Düsseldorf), Lucocq John M., Hall Neil, Bernhardt, Jörg, Heinz Eva, Simon R. Harris, Neil Hall (12782), Lucocq, John M. (School of Medicine, University of St Andrews), Noël, Christophe J. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Weinmaier, Thomas (University of Vienna), Markert, Stephanie (Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald), Tal Dagan, Daniel C. Swan, Sirintra Nakjang, John M. Lucocq, Dörte Becher, Rattei Thomas, Harris Simon R., Daniel C Swan, Christian Hacker, Thomas Rattei (13991), Becher, Dörte, Swan Daniel C., Heinz, Eva (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Weinmaier Thomas, Eva Heinz, Hacker, Christian, Alina V. Goldberg, Simon R Harris, Christophe J. Noël, Thomas Rattei, Eva Heinz (105025), Swan, Daniel C. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Thomas Weinmaier, Simon R. Harris (124597), Schweder, Thomas (Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald), T Martin Embley, Becher, Doerte, Harris, Simon R., Hacker, Christian (School of Medicine, University of St Andrews), Alina V. Goldberg (124596), Heinz, Eva, Dagan, Tal, Becher Dörte, Markert, Stephanie, Bernhardt, Jörg (Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald), Goldberg, Alina V. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Schweder Thomas, Hirt, Robert P., T. Martin Embley (124611), Nakjang, Sirintra (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Dörte Becher (90765), Tom A. Williams (124587), Thomas Schweder (124606), Markert Stephanie, Bernhardt, Joerg, Embley, T. Martin (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Williams, Tom A., Hirt Robert P., Alina V Goldberg, Williams, Tom A. (Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University), Jörg Bernhardt (124600), Jörg Bernhardt, Goldberg, Alina V., Schweder, Thomas, Tal Dagan (68513), Robert P. Hirt, Lucocq, John Milton, Hall, Neil, Christophe J Noël, Thomas Schweder, Becher, Dörte (Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald), Daniel C. Swan (124594), Stephanie Markert (124599)   +105 more
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The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation [PDF]

, 2008
We isolated and characterized a Brassica C genome-specific CACTA element, which was designated Bot1 (Brassica oleracea transposon 1). After analysing phylogenetic relationships, copy numbers and sequence similarity of Bot1 and Bot1 analogues in B ...
Joets, Johann, Moore, Jonathan D., Heslop-Harrison, J. (John), King , Graham J., Ryder, C. D., Heslop-Harrison, J. S., Joets, J., Bailey, John P., Moore, J., Ryder, Carol D., Bailey, J. P., Alix, K., Barker, G. C., King, G. J., Barker, Guy C., Alix, Karine   +15 more
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Genomic parasites and genome evolution [PDF]

Genome Biology, 2009
A report of the Second International Conference/Workshop on the Genomic Impact of Eukaryotic Transposable Elements, Pacific Grove, USA, 6-10 February 2009.
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