Results 1 to 10 of about 141,352 (164)

Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants

Viruses, 2022
An adequate SARS-CoV-2 genomic surveillance strategy has proven to be essential for countries to obtain a thorough understanding of the variants and lineages being imported and successfully established within their borders.
Lize Cuypers, Simon Dellicour, Samuel L. Hong, Barney I. Potter, Bruno Verhasselt, Nick Vereecke, Laurens Lambrechts, Keith Durkin, Vincent Bours, Sofieke Klamer, Guillaume Bayon-Vicente, Carl Vael, Kevin K. Ariën, Ricardo De Mendonca, Oriane Soetens, Charlotte Michel, Bertrand Bearzatto, Reinout Naesens, Jeremie Gras, Anne Vankeerberghen, Veerle Matheeussen, Geert Martens, Dagmar Obbels, Ann Lemmens, Bea Van den Poel, Ellen Van Even, Klara De Rauw, Luc Waumans, Marijke Reynders, Jonathan Degosserie, Piet Maes, Emmanuel André, Guy Baele   +32 more
doaj   +3 more sources

The Case for Genomic Surveillance in Africa. [PDF]

Trop Med Infect Dis
Sub-Saharan Africa has made remarkable strides in genomic surveillance, with more than 50% of countries now equipped with an in-country sequencing capacity and 98% actively contributing data to public genomic repositories. Catalyzed by the momentum of the COVID-19 pandemic, these advancements have extended far beyond SARS-CoV-2 to address a broader ...
Ochola R.
europepmc   +4 more sources

Genomic surveillance of SARS-CoV-2 in Taiwan: A perspective on evolutionary data interpretation and sequencing issues

Biomedical Journal
This review presents a comprehensive perspective on the genomic surveillance of SARS-CoV-2 in Taiwan, with a focus on next-generation sequencing and phylogenetic interpretation.
Yu-Nong Gong, Nai-Yu Kuo, Ting-Syuan Yeh, Shin-Ru Shih, Guang-Wu Chen   +4 more
doaj   +3 more sources

Biosafety and Genomic Epidemiological Surveillance

Эпидемиология и вакцинопрофилактика
The problem of biological safety is extremely relevant today for all countries of the world because of the real and potential threats caused by biological agents that are dangerous to public health and the environment.
V. G. Akimkin, T. A. Semenenko, K. F. Khafizov, S. V. Ugleva, D. V. Dubodelov, E. D. Sverdlov, A. S. Cherkashina, G. A. Gasanov, M. I. Nadtoka, N. P. Rumyantseva, Yu. V. Mikhailova, A. A. Shelenkov, A. S. Esman, I. V. Alekseenko, L. G. Kondratyeva, R. M. Beregovykh   +15 more
doaj   +2 more sources

Genomics and epidemiological surveillance [PDF]

Nature Reviews Microbiology, 2020
This month’s Genome Watch highlights how genomic surveillance can provide important information for identifying and tracking emerging pathogens such as SARS-CoV-2.
Lo, Stephanie W., Jamrozy, Dorota
openaire   +2 more sources

Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013–2014

Western Pacific Surveillance and Response, 2021
Antimicrobial-resistant Neisseria gonorrhoeae is a major threat to public health and is of particular concern in the Western Pacific Region, where the incidence of gonorrhoea is high.
Manuel C. Jamoralin, Jr, Silvia Argimon, Marietta L. Lagrada, Alfred S. Villamin, Melissa L. Masim, June M. Gayeta, Karis D. Boehme, Agnettah M. Olorosa, Sonia B. Sia, Charmian M. Hufano, Victoria Cohen, Lara T. Hernandez, Benjamin Jeffrey, Khalil Abudahab, John Stelling, Matthew T.G. Holden, David M. Aanensen, Celia C. Carlos   +17 more
doaj   +1 more source

Overcoming Data Bottlenecks In Genomic Pathogen Surveillance [PDF]

Clinical Infectious Diseases, 2021
Performing whole genome sequencing (WGS) for the surveillance of antimicrobial resistance (AMR) offers the ability to determine not only the antimicrobials to which rates of resistance are increasing, but also the evolutionary mechanisms and transmission routes responsible for the increase at local, national, and global scales.
Ayorinde O. Afolayan, Johan Fabian Bernal, June M Gayeta, Melissa L. Masim, Varun Shamanna, Monica Abrudan, Khalil Abudahab, Silvia Argimón, Celia Carlos, Sonia Sia, Ravikumar Kadahalli Lingegowda, Iruka N. Okeke, Pilar Donado-Godoy, David M. Aanensen, Anthony Underwood, Harry Harste, Mihir Kekre, Dawn Muddyman, Ben Taylor, Nicole Wheeler, Sophia David, Alejandra Arévalo, María Fernanda Valencia, Erik C D Osma Castro, Geetha Nagaraj, Velu Govindan, Akshata Prabhu, D Sravani, M R Shincy, Steffimole Rose, K N Ravishankar, Anderson O. Oaikhena, Jolaade J Ajiboye, Erkison Ewomazino Odih, Marietta L Lagrada, Polle Krystle V Macaranas, Agnettah M Olorosa, Elmer M Herrera, Ali Molloy, John Stelling, Carolin Vegvari   +40 more
openaire   +3 more sources

Evaluating the usefulness of next-generation sequencing for herb authentication

Food Chemistry: Molecular Sciences, 2021
Food authentication is a rapidly growing field driven by increasing public awareness of food quality and safety. Foods containing herbs are particularly prone to industrial fraud and adulteration. Several methodologies are currently used to evaluate food
Anna Delgado-Tejedor, Pimlapas Leekitcharoenphon, Frank M. Aarestrup, Saria Otani   +3 more
doaj   +1 more source

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch

Nature Communications, 2021
Whole genome sequencing data are increasingly becoming routinely available but generating actionable insights is challenging. Here, the authors describe Pathogenwatch, a web tool for genomic surveillance of S.
Silvia Argimón, Corin A. Yeats, Richard J. Goater, Khalil Abudahab, Benjamin Taylor, Anthony Underwood, Leonor Sánchez-Busó, Vanessa K. Wong, Zoe A. Dyson, Satheesh Nair, Se Eun Park, Florian Marks, Andrew J. Page, Jacqueline A. Keane, Stephen Baker, Kathryn E. Holt, Gordon Dougan, David M. Aanensen   +17 more
doaj   +1 more source

Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 2013–2014

Western Pacific Surveillance and Response, 2021
Methicillin-resistant Staphylococcus aureus (MRSA) remains one of the leading causes of both nosocomial and community infections worldwide. In the Philippines, MRSA rates have remained above 50% since 2010, but resistance to other antibiotics, including ...
Melissa L. Masim, Silvia Argimon, Holly O. Espiritu, Mariane A. Magbanua, Marietta L. Lagrada, Agnettah M. Olorosa, Victoria Cohen, June M. Gayeta, Benjamin Jeffrey, Khalil Abudahab, Charmian M. Hufano, Sonia B. Sia, Matthew T.G. Holden, John Stelling, David M. Aanensen, Celia C. Carlos   +15 more
doaj   +1 more source