Results 21 to 30 of about 1,200,488 (250)

Challenges of SARS-CoV-2 genomic surveillance in India during low positivity rate scenario

Frontiers in Public Health, 2023
Being the second most populous country in the world, India presents valuable lessons for the world about dealing with the SARS-CoV-2 pandemic. From this perspective, we attempted a retrospective evaluation of India’s SARS-CoV-2 genomic surveillance ...
Siddharth Singh Tomar, Siddharth Singh Tomar, Krishna Khairnar, Krishna Khairnar   +3 more
doaj   +1 more source

Comparative Gut Microbiome in Trachypithecus leucocephalus and Other Primates in Guangxi, China, Based on Metagenome Sequencing

Frontiers in Cellular and Infection Microbiology, 2022
The Trachypithecus leucocephalus (white-headed langur) is a highly endangered, karst-endemic primate species, inhabiting the karst limestone forest in Guangxi, Southwest China.
Tengcheng Que, Xianwu Pang, Xianwu Pang, Hongli Huang, Panyu Chen, Yinfeng Wei, Yiming Hua, Hongjun Liao, Jianbao Wu, Shousheng Li, Aiqiong Wu, Meihong He, Xiangdong Ruan, Yanling Hu, Yanling Hu   +14 more
doaj   +1 more source

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland [PDF]

, 2015
The study was supported by grants from the UKCRC Translational Infection Research Initiative, and the Medical Research Council Grant Number G1000803) with contributions to the Grant from the Biotechnology and Biological Sciences Research Council, the ...
Holden, MTG, Raven, Kathy E, Feil, EJ, Feil, Edward J, Raven, Kathy E., Donker, Tjibbe, Holden, Matthew T G, Bentley, SD, Estee Torok, M., Reuter, Sandra, Spratt, BG, Aanensen, David M, Török, M Estée, Parkhill, J, Holden, Matthew TG, Reuter, S, Blane, B, Aanensen, David M., Spratt, Brian G, Toeroek, ME, Blane, Beth, Bentley, Stephen D, Grundmann, H, Aanensen, DM, Toeroek, M. Estee, Reynolds, Rosy, Bentley, Stephen D., Török, Estee M, Holden, Matthew T. G., Feil, Edward J., Peacock, Sharon J., Grundmann, Hajo, Reynolds, R, Peacock, SJ, Raven, KE, Spratt, Brian G., Parkhill, Julian, Peacock, Sharon J, Donker, T   +38 more
core   +4 more sources

CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

Genome Biology, 2021
In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy.
Samuel M. Nicholls, Radoslaw Poplawski, Matthew J. Bull, Anthony Underwood, Michael Chapman, Khalil Abu-Dahab, Ben Taylor, Rachel M. Colquhoun, Will P. M. Rowe, Ben Jackson, Verity Hill, Áine O’Toole, Sara Rey, Joel Southgate, Roberto Amato, Rich Livett, Sónia Gonçalves, Ewan M. Harrison, Sharon J. Peacock, David M. Aanensen, Andrew Rambaut, Thomas R. Connor, Nicholas J. Loman, The COVID-19 Genomics UK (COG-UK) Consortium   +23 more
doaj   +1 more source

High Genetic Diversity of Carbapenem-Resistant Acinetobacter baumannii Isolates Recovered in Nigerian Hospitals in 2016 to 2020

mSphere, 2023
Acinetobacter baumannii causes difficult-to-treat infections mostly among immunocompromised patients. Clinically relevant A. baumannii lineages and their carbapenem resistance mechanisms are sparsely described in Nigeria. This study aimed to characterize
Erkison Ewomazino Odih, Anderson O. Oaikhena, Anthony Underwood, Yaovi Mahuton Gildas Hounmanou, Oyinlola O. Oduyebo, Abayomi Fadeyi, Aaron O. Aboderin, Veronica O. Ogunleye, Silvia Argimón, Vitus Nnaemeka Akpunonu, Phillip O. Oshun, Abiodun Egwuenu, Tochi J. Okwor, Chikwe Ihekweazu, David M. Aanensen, Anders Dalsgaard, Iruka N. Okeke   +16 more
doaj   +1 more source

Understanding the global rise of artemisinin resistance: Insights from over 100,000 Plasmodium falciparum samples

eLife
Artemisinin partial resistance (ART-R) in Plasmodium falciparum is a major challenge to malaria control globally. Over the last two decades, ART-R has spread widely across Southeast Asia, undermining public health strategies and hindering elimination. As
Andrew J Balmer, Nina FD White, Eyyüb S Ünlü, Chiyun Lee, Richard D Pearson, Jacob Almagro-Garcia, Cristina Ariani   +6 more
doaj   +1 more source

Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants

Viruses, 2022
An adequate SARS-CoV-2 genomic surveillance strategy has proven to be essential for countries to obtain a thorough understanding of the variants and lineages being imported and successfully established within their borders.
Lize Cuypers, Simon Dellicour, Samuel L. Hong, Barney I. Potter, Bruno Verhasselt, Nick Vereecke, Laurens Lambrechts, Keith Durkin, Vincent Bours, Sofieke Klamer, Guillaume Bayon-Vicente, Carl Vael, Kevin K. Ariën, Ricardo De Mendonca, Oriane Soetens, Charlotte Michel, Bertrand Bearzatto, Reinout Naesens, Jeremie Gras, Anne Vankeerberghen, Veerle Matheeussen, Geert Martens, Dagmar Obbels, Ann Lemmens, Bea Van den Poel, Ellen Van Even, Klara De Rauw, Luc Waumans, Marijke Reynders, Jonathan Degosserie, Piet Maes, Emmanuel André, Guy Baele   +32 more
doaj   +1 more source

Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments

Communications Biology, 2021
Jose F. Delgado-Blas et al. report a genomic analysis of two antimicrobial-resistant E. coli populations from wastewater and river water. They find that bacteria from wastewater are more resistant to antibiotics and rely on a diverse set of plasmids for ...
Jose F. Delgado-Blas, Cristina M. Ovejero, Sophia David, Natalia Montero, William Calero-Caceres, M. Pilar Garcillan-Barcia, Fernando de la Cruz, Maite Muniesa, David M. Aanensen, Bruno Gonzalez-Zorn   +9 more
doaj   +1 more source

Sequencing data: A genomic network to monitor Earth

, 2012
We propose that a network of genomic observatories should be established to take the planet's 'biological pulse'. We invite participants to assist in the shaping of this network (see genomicobservatories.org).
Field, D., The Genomic Observatories Network, Neil Davies, Hirsch, P. R., The Genomic Observatories Network, ., The Genomic Observatories Network,, Davies, N., Field, Dawn, Bates, N., Dawn Field, Davies, Neil   +10 more
core   +1 more source

Surveillance Stories: Imagining Surveillance Futures

, 2021
Editorial introduction to special issue on "Surveillance Stories: Imagining Surveillance Futures.
Cahill, Susan, Newell, Bryce
core   +1 more source