Results 11 to 20 of about 149,760 (296)

Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013–2014 [PDF]

Western Pacific Surveillance and Response, 2021
Objective: Acinetobacter baumannii is an opportunistic nosocomial pathogen that has increasingly become resistant to carbapenems worldwide. In the Philippines, rates of carbapenem resistance and multidrug resistance are above 50%.
Jeremiah Chilam, Silvia Argimon, Marilyn T Limas, Melissa L Masim, June M Gayeta, Marietta L Lagrada, Agnettah M Olorosa, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey, Khalil Abudahab, Charmian M Hufano, Sonia B Sia, Matthew TG Holden, John Stelling, David M Aanensen, Celia C Carlos   +16 more
doaj   +2 more sources

Pathogen genomic surveillance and the AI revolution [PDF]

Journal of Virology
ABSTRACT The unprecedented sequencing efforts during the COVID-19 pandemic paved the way for genomic surveillance to become a powerful tool for monitoring the evolution of circulating viruses. Herein, we discuss how a state-of-the-art artificial intelligence approach called protein language models (pLMs) can be used ...
Spyros Lytras, Kieran D. Lamb, Jumpei Ito, Joe Grove, Ke Yuan, Kei Sato, Joseph Hughes, David L. Robertson   +7 more
openaire   +3 more sources

Challenges of SARS-CoV-2 genomic surveillance in India during low positivity rate scenario [PDF]

Frontiers in Public Health, 2023
Being the second most populous country in the world, India presents valuable lessons for the world about dealing with the SARS-CoV-2 pandemic. From this perspective, we attempted a retrospective evaluation of India’s SARS-CoV-2 genomic surveillance ...
Siddharth Singh Tomar, Siddharth Singh Tomar, Krishna Khairnar, Krishna Khairnar   +3 more
doaj   +2 more sources

Innovations in genomic antimicrobial resistance surveillance

The Lancet Microbe, 2023
Whole-genome sequencing of antimicrobial-resistant pathogens is increasingly being used for antimicrobial resistance (AMR) surveillance, particularly in high-income countries. Innovations in genome sequencing and analysis technologies promise to revolutionise AMR surveillance and epidemiology; however, routine adoption of these technologies is ...
Wheeler, Nicole E, Price, Vivien, Cunningham-Oakes, Edward, Tsang, Kara K, Nunn, Jamie G, Midega, Janet T, Anjum, Muna F, Wade, Matthew J, Feasey, Nicholas A, Peacock, Sharon J, Jauneikaite, Elita, Baker, Kate S, SEDRIC Genomics Surveillance Working Group   +12 more
openaire   +4 more sources

Next-Generation Sequencing and Bioinformatics Consortium Approach to Genomic Surveillance

Emerging Infectious Diseases
Genomic surveillance programs benefit greatly from a network of committed, well-supported laboratories that conduct ongoing surveillance activities for pathogens of public health importance. The experiences of the Global Emerging Infections Surveillance
Lindsay C. Morton, Nazia Rahman, Kimberly A. Bishop-Lilly   +2 more
doaj   +2 more sources

Global disparities in SARS-CoV-2 genomic surveillance [PDF]

, 2022
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize molecular tests, treatments, vaccines, and guide public health responses.
Alexiev, Ivailo, Carrington, Christine VF, Matkin, Lucy E, Flaxman, Seth, Hassler, Gabriel W, von Eije, Karin J, Baele, Guy, Houriyah, Tegally, Branda, Ben, Sabino, Ester C, Vasconcelos, Tereza R, Suchard, Marc A, Githinji, George, Zuckerman, Neta S, Gurry, Celine, Brito, Anderson F, Ivanov, Ivan N, Hill, Sarah C, de Oliveira, Tulio, Bulgarian SARS-CoV-2 sequencing group, Ho, Joses, COVID-19 Impact Project, Whittaker, Charles, Dudas, Gytis, Agoti, Charles N, Network for Genomic Surveillance in South Africa (NGS-SA), Resende, Paola Cristina, Swiss SARS-CoV-2 Sequencing Consortium, Faria, Nuno Miguel, Aguiar, Renato Santana, Blankenship, Heather M, Semonva, Elizaveta, Kraemer, Moritz UG, Pybus, Oliver G, Lin, Raymond TP, Grubaugh, Nathan D, von Kerkhove, Maria, Philipova, Ivva, Perkins, Mark D, Bhatt, Samir, Sintchenko, Vitali, Maurer-Stroh, Sebastian, Naidoo, Dhamari, Kalinich, Chaney C, Sahadeo, Nikita SD, GISAID core curation team, Mor, Orna, Spilki, Fernando R, Howden, Benjamin P, Dye, Christopher, Danish Covid-19 Genome Consortium#; Fiocruz COVID-19 Genomic Surveillance Network, Siqueira, Marilda Mendonca, Communicable Diseases Genomics Network (Australia and New Zealand)   +52 more
core   +10 more sources

A Genomic Surveillance Circuit for Emerging Viral Pathogens

Microorganisms
Genomic surveillance has been crucial in monitoring the evolution and spread of SARS-CoV-2. In Andalusia (Spain), a coordinated genomic surveillance circuit was established to systematically sequence and analyze viral genomes across the region. This initiative organizes sample collection through 27 hospitals, which act as regional hubs within their ...
Carlos S, Casimiro-Soriguer, Maria, Lara, Andrea, Aguado, Carlos, Loucera, Francisco M, Ortuño, Nicola, Lorusso, Jose M, Navarro-Marí, Sara, Sanbonmatsu-Gámez, Pedro, Camacho-Martinez, Laura, Merino-Diaz, Adolfo, de Salazar, Ana, Fuentes, , The Andalusian Covid-Sequencing Initiative, Jose A, Lepe, Federico, García, Joaquín, Dopazo, Javier, Perez-Florido   +16 more
openaire   +6 more sources

Enhancing clinical microbiology for genomic surveillance of antimicrobial resistance implementation in Africa [PDF]

Antimicrobial Resistance and Infection Control
Surveillance is essential in the fight against antimicrobial resistance (AMR), to monitor the extent of resistance, inform prevention, control measures, and evaluate intervention progress.
Henry M Kajumbula, Daniel Gyamfi Amoako, Sofonias K Tessema, Mabel Kamweli Aworh, Francis Chikuse, Iruka N Okeke, Uduak Okomo, Sabelle Jallow, Beverly Egyir, Aquillah M Kanzi, Abdul Karim Sesay, Yewande Habibat Alimi, Kwabena O Duedu, Olga Perovic   +13 more
doaj   +2 more sources

Europe-wide expansion and eradication of multidrug-resistant Neisseria gonorrhoeae lineages: a genomic surveillance study [PDF]

, 2022
Background: Genomic surveillance using quality-assured whole-genome sequencing (WGS) together with epidemiological and antimicrobial resistance (AMR) data is essential to characterise the circulating Neisseria gonorrhoeae lineages and their association ...
Sajedi, Noshin, Yeats, Corin A, Spiteri, Gianfranco, Underwood, Anthony,, Jacobsson, Susanne,, Day, Michaela, Euro-GASP study group, Bluemel, Benjamin,, Underwood, Anthony, Cole, Michelle J, Aanensen, David M, Centre for Genomic Pathogen Surveillance, Yeats, Corin A.,, Centre for Genomic Pathogen Surveillance and the Euro-GASP study group, Abad, Raquel, Aanensen, David M.,, Abudahab, Khalil,, Golparian, Daniel, Cole, Michelle J.,, Abudahab, Khalil, Diaz Franco, Asuncion, Sánchez-Busó, Leonor, Sánchez-Busó, Leonor,, Golparian, Daniel,, Unemo, Magnus, Jacobsson, Susanne, Sajedi, Noshin,, Day, Michaela,, Unemo, Magnus,, Vazquez-Moreno, Julio Alberto, Bluemel, Benjamin, Spiteri, Gianfranco,   +31 more
core   +1 more source

A Potential SARS-CoV-2 Variant of Interest (VOI) Harboring Mutation E484K in the Spike Protein Was Identified within Lineage B.1.1.33 Circulating in Brazil

Viruses, 2021
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) epidemic in Brazil was dominated by two lineages designated as B.1.1.28 and B.1.1.33. The two SARS-CoV-2 variants harboring mutations at the receptor-binding domain of the Spike (S) protein,
Paola Cristina Resende, Tiago Gräf, Anna Carolina Dias Paixão, Luciana Appolinario, Renata Serrano Lopes, Ana Carolina da Fonseca Mendonça, Alice Sampaio Barreto da Rocha, Fernando Couto Motta, Lidio Gonçalves Lima Neto, Ricardo Khouri, Camila I. de Oliveira, Pedro Santos-Muccillo, João Felipe Bezerra, Dalane Loudal Florentino Teixeira, Irina Riediger, Maria do Carmo Debur, Rodrigo Ribeiro-Rodrigues, Anderson Brandao Leite, Cliomar Alves do Santos, Tatiana Schäffer Gregianini, Sandra Bianchini Fernandes, André Felipe Leal Bernardes, Andrea Cony Cavalcanti, Fábio Miyajima, Claudio Sachhi, Tirza Mattos, Cristiano Fernandes da Costa, Edson Delatorre, Gabriel L. Wallau, Felipe G. Naveca, Gonzalo Bello, Marilda Mendonça Siqueira   +31 more
doaj   +1 more source