Genome-Wide Association Study and Subsequent Exclusion of ATCAY as a Candidate Gene Involved in Equine Neuroaxonal Dystrophy Using Two Animal Models. [PDF]
, 2020 Equine neuroaxonal dystrophy/equine degenerative myeloencephalopathy (eNAD/EDM) is an inherited neurodegenerative disorder of unknown etiology. Clinical signs of neurological deficits develop within the first year of life in vitamin E (vitE) deficient ...
Dahlgren, Anna R +6 more
core +1 more source
Development of a Next-Generation NIL Library in Arabidopsis Thaliana for Dissecting Complex Traits [PDF]
, 2013 The identification of the loci and specific alleles underlying variation in quantitative traits is an important goal for evolutionary biologists and breeders.
Bauerle, William L. +8 more
core +3 more sources
Genome-wide SNP typing of ancient DNA: Determination of hair and eye color of Bronze Age humans from their skeletal remains. [PDF]
, 2020 Objective A genome-wide high-throughput single nucleotide polymorphism (SNP) typing method was tested with respect of the applicability to ancient and degraded DNA. The results were compared to mini-sequencing data achieved through single base extension (
Dörk, T. +5 more
core +2 more sources
High throughput SNP discovery and genotyping in hexaploid wheat
PLoS ONE, 2018 Because of their abundance and their amenability to high-throughput genotyping techniques, Single Nucleotide Polymorphisms (SNPs) are powerful tools for efficient genetics and genomics studies, including characterization of genetic resources, genome-wide
Hélène Rimbert +18 more
semanticscholar +1 more source
The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
Journal of Animal Science and Biotechnology, 2019 The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from individual ...
Jean-Simon Brouard +3 more
semanticscholar +1 more source
Genotyping Polyploids from Messy Sequencing Data
Genetics, 2018 Gerard et al. highlight several issues encountered when genotyping polyploid organisms from next-generation sequencing data, including allelic bias, overdispersion, and outlying observations.
David Gerard +3 more
semanticscholar +1 more source
The Global Hepatitis B Virus Genotype Distribution Approximated from Available Genotyping Data
Genes, 2018 Hepatitis B virus (HBV) is divided into nine genotypes, A to I. Currently, it remains unclear how the individual genotypes contribute to the estimated 250 million chronic HBV infections.
S. Velkov +3 more
semanticscholar +1 more source
Plant Biotechnology Journal, 2017 Summary In the last decade, the revolution in sequencing technologies has deeply impacted crop genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire crop populations have proliferated and opened the door to wider use of ...
Armin Scheben, J. Batley, D. Edwards
semanticscholar +1 more source
Molecular Ecology Resources, 2015 Genotyping‐in‐Thousands by sequencing (GT‐seq) is a method that uses next‐generation sequencing of multiplexed PCR products to generate genotypes from relatively small panels (50–500) of targeted single‐nucleotide polymorphisms (SNPs) for thousands of ...
N. Campbell, S. Harmon, S. Narum
semanticscholar +1 more source
International effort toward a SSR-based linkage map for C. clementina : [P128] [PDF]
, 2008 Following the difficulties encountered for assembling a 1.2 x sequencing of the highly heterozygous sweet orange genome, the International Citrus Genomic Consortium (ICOC) decided to estab1ish the first reference sequence of a whole nuclear citrus genome
Billot, Claire +17 more
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