Results 81 to 90 of about 9,087 (209)

Varidnaviruses in the Human Gut: A Major Expansion of the Order Vinavirales

Viruses, 2022
Bacteriophages play key roles in the dynamics of the human microbiome. By far the most abundant components of the human gut virome are tailed bacteriophages of the realm Duplodnaviria, in particular, crAss-like phages. However, apart from duplodnaviruses,
Natalya Yutin, Mike Rayko, Dmitry Antipov, Pascal Mutz, Yuri I. Wolf, Mart Krupovic, Eugene V. Koonin   +6 more
doaj   +1 more source

pylifemap: Mapping data onto the tree of life

Methods in Ecology and Evolution, EarlyView.
Abstract The need to visualize data associated with NCBI Taxonomy Identifiers is growing in various biological fields ranging from comparative genomics to metagenomics and metabarcoding, and even for outreach. No tool today allows visualization of such data while still keeping the full vision of the whole taxonomy, possibly causing a biased view of the
Julien Barnier, Cassandra Bompard, Aurélie Siberchicot, Vincent Navratil, Joaquim Martin, Damien M. de Vienne   +5 more
wiley   +1 more source

Periodontal Medicine Rewired: Mechanisms Linking Periodontitis to Systemic Diseases

Journal of Periodontal Research, EarlyView.
This review reorganizes decades of research in periodontal medicine into a multi‐dimensional framework, illustrating how periodontitis influences systemic health through at least seven interconnected mechanisms. ABSTRACT Periodontitis is now recognized not merely as a localized oral condition but as a systemic disease linked to over 70 communicable and
Mario Romandini, George Hajishengallis, Mike Curtis, Giacomo Baima   +3 more
wiley   +1 more source

Macrobiota — helminths as active participants and partners of the microbiota in host intestinal homeostasis [PDF]

, 2016
Important insights have recently been gained in our understanding of the intricate relationship in the intestinal milieu between the vertebrate host mucosal immune response, commensal bacteria, and helminths. Helminths are metazoan worms (macrobiota) and
Gause, William C., Maizels, Rick M.
core   +1 more source

Gut virome-wide association analysis identifies cross-population viral signatures for inflammatory bowel disease

Microbiome
Background The gut virome has been implicated in inflammatory bowel disease (IBD), yet a full understanding of the gut virome in IBD patients, especially across diverse geographic populations, is lacking.
Xiangge Tian, Shenghui Li, Chao Wang, Yanyan Zhang, Xiaoying Feng, Qiulong Yan, Ruochun Guo, Fan Wu, Chunxue Wu, Yan Wang, Xiaokui Huo, Xiaochi Ma   +11 more
doaj   +1 more source

Oral Microbiome in Systemic Autoimmune Diseases: A Systematic Review

Oral Diseases, EarlyView.
ABSTRACT Objective The oral cavity represents a key but underexplored interface between host immunity and microbial communities. The aim of this systematic review was to synthesize current literature on oral microbiota alterations in systemic autoimmune diseases.
Sophie Jung, Eirini Militsi, Olivier Huck   +2 more
wiley   +1 more source

Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman [PDF]

, 2015
A sample of caecal effluent was obtained from a female patient who had undergone a routine colonoscopic examination. Bacteria were isolated anaerobically from the sample, and screened against the remaining filtered caecal effluent in an attempt to ...
Altschul, Besemer, Bogovazova, Breitbart, Breitbart, Cantón, Cao, Casjens, Chhibber, Chun, Cui, Drulis-Kawa, Ellrott, Fung, Geyer, Harada, Hoyles, Hsu, Hung, Jamal, Karumidze, Kim, Kumari, Kumari, Kumari, Kęsik-Szeloch, Lepage, Lin, Lin, Lin, Luo, Malik, Mills, Minot, Minot, Mishra, Niu, Pan, Pan, Pell, Randal Bollinger, Reyes, Reyes, Roberts, Roux, Rutherford, Schulz, Shang, Shaw, Souza, Turton, Vejborg, Ventura, Verma, Viertel, Villion, Wagner, Wietzorrek, Xu, Šimoliūnas   +59 more
core   +6 more sources

A Genomic Catalog of Migratory Microbiomes from Wild Birds across China's Habitats

Advanced Science, Volume 13, Issue 26, 8 May 2026.
ABSTRACT Migratory birds play an important role in the spread of antimicrobial resistance (AMR); however, gaps in surveillance data from vital regions along migratory flyways across China limit the detection of emergent threats. Here, we assembled 340 metagenomes from 52 bird species covering 11 provincial administrative districts in China, presenting ...
Yanan Wang, Heqi Wu, Mengqi Qu, Chunge Zhang, Ziqian Xu, Yuhang Pei, Chaochao Zhao, Jiangtao Wang, Sufang Ma, Na Lyu, Xuebin Xu, Yuhai Bi, Baoli Zhu, George F. Gao   +13 more
wiley   +1 more source

Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes. [PDF]

, 2019
BackgroundCharacterization of the skin and wound microbiome is of high biomedical interest, but is hampered by the low biomass of typical samples. While sample preparation from other microbiomes (e.g., gut) has been the subject of extensive optimization,
Chen, Irene A, Deacon, John M, Kim, Colin Y, Verbanic, Samuel   +3 more
core   +1 more source

Improving gut virome comparisons using predicted phage host information. [PDF]

mSystems
AbstractThe human gut virome is predominantly made up of bacteriophages (phages), viruses that infect bacteria. Metagenomic studies have revealed that phages in the gut are highly individual specific and dynamic. These features make it challenging to perform meaningful cross-study comparisons. While several taxonomy frameworks exist to group phages and
Shamash M, Sinha A, Maurice CF.
europepmc   +4 more sources