Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum [PDF]
BMC Genomics, 2011 Background Eight diverse sorghum (Sorghum bicolor L. Moench) accessions were subjected to short-read genome sequencing to characterize the distribution of single-nucleotide polymorphisms (SNPs).
White Frank F +6 more
doaj +6 more sources
High-throughput sequencing reveals single nucleotide variants in longer-kernel bread wheat [PDF]
Frontiers in Plant Science, 2016 The transcriptomes of bread wheat Yunong 201 and its ethyl methanesulfonate (EMS) derivative Yunong 3114 were obtained by next-sequencing technology. Single nucleotide variants (SNVs) in the wheat strains were explored and compared.
Feng Chen +5 more
doaj +5 more sources
Ten simple rules for managing high-throughput nucleotide sequencing data [PDF]
bioRxiv, 2016 The challenges posed by large data volumes produced by high-throughput nucleotide sequencing technologies are well known. This document establishes ten simple rules for coping with these challenges. At the level of master data management, (1) data triage
Rutger Vos
semanticscholar +4 more sources
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution [PDF]
Nucleic Acids Research, 2019 Targeted PCR amplification and high-throughput sequencing (amplicon sequencing) of 16S rRNA gene fragments is widely used to profile microbial communities.
Benjamin J. Callahan +7 more
semanticscholar +6 more sources
Uncommon nucleotide excision repair phenotypes revealed by targeted high-throughput sequencing [PDF]
Orphanet Journal of Rare Diseases, 2016 BackgroundDeficient nucleotide excision repair (NER) activity causes a variety of autosomal recessive diseases including xeroderma pigmentosum (XP) a disorder which pre-disposes to skin cancer, and the severe multisystem condition known as Cockayne ...
Nadège Calmels +28 more
semanticscholar +7 more sources
More affordable and effective noninvasive single nucleotide polymorphism genotyping using high‐throughput amplicon sequencing [PDF]
Molecular Ecology Resources, 2020 Non-invasive genotyping methods have become key elements of wildlife research over the last two decades, but their widespread adoption is limited by high costs, low success rates, and high error rates.
Charlotte E. Eriksson +2 more
semanticscholar +5 more sources
Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red deer and Canadian elk [PDF]
bioRxiv, 2015 Deer farming is a significant international industry. For genetic improvement, using genomic tools, an ordered array of DNA variants and associated flanking sequence across the genome is required.
Rüdiger Bräuning +8 more
semanticscholar +4 more sources
Rapid, High-Throughput Identification of Anthrax-Causing and Emetic Bacillus cereus Group Genome Assemblies via BTyper, a Computational Tool for Virulence-Based Classification of Bacillus cereus Group Isolates by Using Nucleotide Sequencing Data [PDF]
Applied and Environmental Microbiology, 2017 The Bacillus cereus group comprises nine species, several of which are pathogenic. Differentiating between isolates that may cause disease and those that do not is a matter of public health and economic importance, but it can be particularly challenging ...
Laura M. Carroll +3 more
openalex +2 more sources
High-throughput nucleotide sequence analysis of diverse bacterial communities in leachates of decomposing pig carcasses [PDF]
Genetics and Molecular Biology, 2015 The leachate generated by the decomposition of animal carcass has been implicated as an environmental contaminant surrounding the burial site. High-throughput nucleotide sequencing was conducted to investigate the bacterial communities in leachates from ...
Seung-Hak Yang +6 more
semanticscholar +7 more sources
High-throughput single nucleotide polymorphism (SNP) identification and mapping in the sesame (Sesamum indicum L.) genome with genotyping by sequencing (GBS) analysis [PDF]
Molecular Breeding, 2016 Sesame (Sesamum indicum L. syn. Sesamum orientale L.) is considered to be the first oil seed crop known to man. Despite its versatile use as an oil seed and a leafy vegetable, sesame is a neglected crop and has not been a subject of molecular genetic research until the last decade.
Ayşe Özgür Uncu +3 more
semanticscholar +7 more sources