Application of Nanopore Sequencing for High Throughput Genotyping in Horses
Animals, 2023 Nanopore sequencing is a third-generation biopolymer sequencing technique that relies on monitoring the changes in an electrical current that occur as nucleic acids are passed through a protein nanopore.
Artur Gurgul +6 more
doaj +1 more source
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
Bioinform., 2015 Motivation: Detection of random errors and systematic biases is a crucial step of a robust pipeline for processing high-throughput sequencing (HTS) data.
K. Okonechnikov +2 more
semanticscholar +1 more source
Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology
Applied and Environmental Microbiology, 2021 Short-read, high-throughput sequencing (HTS) methods have yielded numerous important insights into microbial ecology and function. Yet, in many instances short-read HTS techniques are suboptimal, for example, by providing insufficient phylogenetic ...
L. Tedersoo +3 more
semanticscholar +1 more source
The power of retrotransposons in high-throughput genotyping and sequencing
Frontiers in Plant Science, 2023 The use of molecular markers has become an essential part of molecular genetics through their application in numerous fields, which includes identification of genes associated with targeted traits, operation of backcrossing programs, modern plant breeding, genetic characterization, and marker-assisted selection.
Yunus Emre Arvas +5 more
openaire +6 more sources
YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs. [PDF]
, 2017 Besides translation, transfer RNAs (tRNAs) play many non-canonical roles in various biological pathways and exhibit highly variable expression profiles.
Honda, Shozo +5 more
core +2 more sources
GigaScience, 2017 Quality control (QC) and preprocessing are essential steps for sequencing data analysis to ensure the accuracy of results. However, existing tools cannot provide a satisfying solution with integrated comprehensive functions, proper architectures, and ...
Yuxin Chen +14 more
semanticscholar +1 more source
High-throughput DNA sequencing to survey bacterial histidine and tyrosine decarboxylases in raw milk cheeses [PDF]
, 2015 peer-reviewedBackground The aim of this study was to employ high-throughput DNA sequencing to assess the incidence of bacteria with biogenic amine (BA; histamine and tyramine) producing potential from among 10 different cheeses varieties.
Cotter, Paul D. +6 more
core +1 more source
High throughput error corrected Nanopore single cell transcriptome sequencing
Nature Communications, 2020 Droplet-based high throughput single cell sequencing techniques can often lose information on transcript splicing and heterogenity. Here the authors introduce ScNaUmi-seq, which uses Oxford Nanopore sequencing and barcoding to generate high accuracy full
Kevin Lebrigand +3 more
doaj +1 more source
First occurrence of bidens mottle virus in Brazil: biological and molecular characterization of isolates infecting Zinnia sp. and Bidens pilosa [PDF]
Scientia Agricola, 2023 Zinnia sp. and hairy beggartick (Bidens pilosa) plants exhibiting symptoms of possible virus infection were found in the municipality of Santa Bárbara d’Oeste, São Paulo State, Brazil.
Gabriel Madoglio Favara +8 more
doaj +1 more source
SnapShot: High-Throughput Sequencing Applications
Cell, 2011 / 25 (X2) 8 daysPacific Biosciences http://www.pacificbiosciences.comNo amplification; Synthesis Fluorescence >1000 bp (SE) 150,000 per SMRT cell N/AIon Torrent http://www.iontorrent.comEmulsion PCR; Synthesis Change in pH 200 bp (SE) Variable 90% of the full genome resolved (both alleles)400 human genomes per monthModified and updated from Metzker ...
Jason Moffat +3 more
openaire +3 more sources