Results 141 to 150 of about 102,930 (272)

SARS-CoV-2 Illumina MiSeq protocol v.2 v2

, 2021
ARTIC amplicon sequencing protocol adapted from Josh Quick's https://www.protocols.io/view/ncov-2019-sequencing-protocol-v2-bdp7i5rn for illumina sequencing of SARS-CoV-2
openaire   +1 more source

Microbiological Mechanisms of Sand‐Mixed Soil Improvement in Continuously Cropped Soil

Land Degradation &Development, EarlyView.
ABSTRACT Sand‐mix soil is a widely adopted method for soil improvement in agricultural production. However, beyond the evident enhancement of physical structure, the mechanisms by which sand‐mix soil promotes crop root growth by influencing soil physicochemical properties and microbial communities remain insufficiently understood.
Yue Huang, Meng Jia, Xuanquan Zhu, Yuxiang Bai, Jie Li, Tikun Zhang, Xiaojun Zhao, Weidi Tang, Mengyuan Lyu, Xingyang Xu, Ge Wang, Na Wang   +11 more
wiley   +1 more source

Comparative analysis of Illumina, PacBio, and nanopore for 16S rRNA gene sequencing of rabbit’s gut microbiota

Frontiers in Microbiomes
This research aims to assess whether sequencing the full length of the 16S rRNA gene using PacBio HiFi sequencing and Oxford Nanopore Technology (ONT) platforms outperform Illumina MiSeq platform in providing detailed specie level insights.
Iliyass Biada, María Antonia Santacreu, Oscar González-Recio, Noelia Ibáñez-Escriche   +3 more
doaj   +1 more source

Multitrophic alpha and beta diversity of lake plankton across Canada

Oikos, EarlyView.
Anthropogenic environmental changes impact freshwater biodiversity globally. While biodiversity assessments in freshwater environments have traditionally focused on individual groups of organisms or trophic levels, considering patterns of ‘multitrophic biodiversity' across the food web provides a more comprehensive view of anthropogenic impacts and ...
Vincent Fugère, Cindy Paquette, Gillian K. Martin, Rebecca E. Garner, Yannick Huot, David A. Walsh, Beatrix E. Beisner   +6 more
wiley   +1 more source

Range‐wide sampling reveals cryptic lineages but largely conserved mycorrhizal associations in the Japanese fairy lantern Thismia kobensis

PLANTS, PEOPLE, PLANET, EarlyView.
The jewel‐like flowers of Thismia are as rare as they are beautiful, often recorded from only a single site per species. Access to 15 populations of T. kobensis has enabled an uncommon, range‐wide assessment of morphology, genetics, and fungal partners. Our analyses showed that T.
Kenji Suetsugu, Kazuma Takizawa, Kazuki Inui, Akihiro Nishimura, Shun K. Hirota   +4 more
wiley   +1 more source

Rethinking intensification: Biodiversity‐inclusive management sustains coconut yields

PLANTS, PEOPLE, PLANET, EarlyView.
Coconut palm expansion in West Africa will shape rural livelihoods and ecosystems. Our findings show that intensive practices reduce beneficial soil fungi and increase pathogens, threatening long‐term productivity. Lower‐intensity management that retains ground vegetation can sustain or boost yields while improving soil health.
Benjamin J. Roberts, C. M. ( Tilly) Collins, Konan Engueran Djaha, Hamish Duncalf‐Youngson, Konan Jean Louis, Hala N'klo, Emma Ransome, Doubi Bi Tra Serges, Jahcub Trew, Jake Williams, Vincent Savolainen   +10 more
wiley   +1 more source

Evaluation of a custom QIAseq targeted DNA panel with 164 ancestry informative markers sequenced with the Illumina MiSeq. [PDF]

Sci Rep, 2021
Truelsen D, Freire-Aradas A, Nazari M, Aliferi A, Ballard D, Phillips C, Morling N, Pereira V, Børsting C.   +8 more
europepmc   +1 more source

Plant species are more important to bacterial community composition than seeding ratio in a pea‐canola intercropping system

PLANTS, PEOPLE, PLANET, EarlyView.
Demand for agricultural land has increased due to rising demand for food, potentially leading to expansion into previously untouched habitats, which threatens refugia of native plants. We aimed to provide insight into how variation in seeding ratio may impact soil bacterial communities in a pea‐canola intercropping system, potentially altering crop ...
Janice M. Parks, Braeden J. Stiffler, Maren L. Friesen   +2 more
wiley   +1 more source

Whole-Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina MiSeq ARTIC Protocol. [PDF]

J Clin Microbiol, 2021
Plitnick J, Griesemer S, Lasek-Nesselquist E, Singh N, Lamson DM, St George K.   +5 more
europepmc   +1 more source

Incorporating environmental DNA metabarcoding for improved benthic biodiversity and habitat mapping

Remote Sensing in Ecology and Conservation, EarlyView.
Seafloor imagery is commonly used to collect information about the distribution of benthic organisms in order to generate habitat and biodiversity maps. Recent advances in genomics (e.g., environmental DNA; eDNA) show potential to complement video surveys for habitat mapping, but there have been few examples testing this.
Rylan J. Command, Shreya Nemani, Benjamin Misiuk, Mehrdad Hajibabaei, Nicole Fahner, Emily Porter, Greg Singer, Beverly McClenaghan, Katleen Robert   +8 more
wiley   +1 more source