Results 121 to 130 of about 102,930 (272)

Understanding and mitigating some limitations of Illumina© MiSeq for environmental sequencing of Fungi

, 2017
ITS-amplicon metabarcode studies using the illumina MiSeq sequencing platform are the current standard tool for fungal ecology studies. Here we report on some of the particular challenges experienced while creating and using a ribosomal RNA gene (rDNA ...
Bitty Roy, Roo Vandegrift, Dan Thomas, Graham Bailes   +3 more
core   +1 more source

Effect of ammonium concentration on methane oxidation and CO2 removal in an anaerobic biotrickling filter treating synthetic landfill gas and leachate

Journal of Chemical Technology &Biotechnology, EarlyView.
Abstract BACKGROUND Landfill gas (LFG) and leachate are commonly treated separately through energy‐intensive processes. This study evaluated the integration of both streams in an anaerobic biotrickling filter (BTF) to achieve simultaneous methane (CH4) and carbon dioxide (CO2) removal coupled with ammonium (NH4+) transformation, and how the microbial ...
Cecilia Lizeth Alvarez‐Guzmán, Karla María Muñoz‐Páez, Alejandro Vargas, Idania Valdez‐Vazquez   +3 more
wiley   +1 more source

Microbial genome (Illumina MiSeq) sequencing of drinking water treatment residuals to evaluate compatibility with environmental applications. [PDF]

Environ Monit Assess, 2023
Turner T, Tonge D, Glanville HC, Wheeler R, Oliver IW.   +4 more
europepmc   +1 more source

Analysis of the eight vaccine batches using whole genome sequencing with the Illumina MiSeq 2000 platform.

, 2015
Abbreviations: N, nucleoprotein; P, phosphoprotein; M, matrix protein.a) Data show the mean percentage of SADB19/SAG2 mutations for the first half of rabies genome by comparison with the SAD Bern genomic sequence (EF206708) which was used as a reference ...
Zita Muizniece (819324), Ingrida Jaceviciene (819325), Zuzana Dirbakova (819323), Florence Cliquet (331147), Vladimir Celer (819327), Marta Matulova (126441), Evelyne Picard-Meyer (331154), Franco Mutinelli (584767), Miroslav Mojzis (819322), Jitka Frolichova (819326), Ivan Rychlik (126460)   +10 more
core   +1 more source

Mapping the subgingival HerBiome and HisBiome over the human healthspan

Journal of Periodontology, EarlyView.
Abstract Background Understanding the intricate relationship between sex, age, and the oral microbiome is crucial for deciphering the onset and progression of numerous age‐related oral and systemic diseases. Methods Subgingival plaque was collected from 781 periodontally and systemically healthy females and 160 males spanning 0 to 80 years.
Rahul Nikam, Kazune Pax, Michelle Lee‐Scott Beverly, Purnima S. Kumar   +3 more
wiley   +1 more source

Illumina MiSeq sequencing investigation of Chanhua (Cordyceps cicadae Shing) fungal community structures in different regions

Journal of Traditional Chinese Medical Sciences, 2018
Objective: This study was carried out to elucidate the fungal diversity of Chanhua (Cordyceps cicadae Shing), which is an entomogenous fungal parasite that grows on wingless cicada nymphs.
Tengfei Liu, Hongmei Zhang, Xiaosa Shi, Weiwei Ma, Yancong Zhang, Ziyao Liu, Ying Huang, Xinyuan Shi   +7 more
doaj   +1 more source

Periodontitis during pregnancy: The effect on the gut microbiome and intestinal inflammation

Journal of Periodontology, EarlyView.
Abstract Background Periodontitis has been epidemiologically associated with adverse pregnancy outcomes, but causality remains difficult to establish in humans due to confounding factors. This study uses a controlled murine model to examine the effects of experimentally induced periodontitis on the composition of the gut microbiota and gastrointestinal
Richard Bright, Matthew G. Macowan, Keyuan Tian, Tracy Fitzsimmons, Rebecca L. Wilson, Claire T. Roberts, Claus T. Christophersen, Peter M. Bartold, Stephen P. Kidd, Peter S. Zilm   +9 more
wiley   +1 more source

Comparative Analysis of Library Preparation Approaches for SARS-CoV-2 Genome Sequencing on the Illumina MiSeq Platform. [PDF]

Int J Mol Sci, 2023
Gladkikh A, Klyuchnikova E, Pavlova P, Sbarzaglia V, Tsyganova N, Popova M, Arbuzova T, Sharova A, Ramsay E, Samoilov A, Dedkov V, Totolian A.   +11 more
europepmc   +1 more source

Candida auris sequencing by Illumina miSeq using Illumina DNA Prep v1

Candida auris sequencing is becoming more important for public health and surveillance. This protocol is designed to guide individuals experienced in sequencing in setting up a SOP for sequencing C. auris. This protocol is designed for Illumina short-read sequencing.
openaire   +1 more source

Lizard and Frog MiSeq Sequences

, 2018
Illumina MiSeq sequences from three lizard and six frog species, 10 samples per species, from near the campus of Charles Darwin University, Australia.
Chava Weitzman (5725250), Keith Christian (5737020), Karen Gibb (5737019)   +2 more
core   +1 more source