Results 11 to 20 of about 173,111 (241)

Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis

BMC Genomics, 2022
Background GenoLab M is a recently developed next-generation sequencing (NGS) platform from GeneMind Biosciences. To establish the performance of GenoLab M, we present the first report to benchmark and compare the WGS and WES sequencing data of the ...
Chaoyang Li, Xue Fan, Xin Guo, Yongfeng Liu, Miao Wang, Xiao Chao Zhao, Ping Wu, Qin Yan, Lei Sun   +8 more
doaj   +1 more source

Characterization of the complete mitochondrial genome of Coprinellus micaceus, a wild saprobic mushroom in China

Mitochondrial DNA. Part B. Resources, 2021
The Glistening Inkcap (Coprinellus micaceus) is a wild saprobic mushroom in China. In this study, we assembled and annotated its complete mitochondrial genome using raw data sequenced through Illumina NovaSeq 6000 platform (Illumina, San Diego, CA).
Shu-rong Wang, Jiang-ping Zhang, Yi-rong He, Ming-chang Chang, Jun-long Meng   +4 more
doaj   +1 more source

The complete chloroplast genome sequence of Iris tectorum

Mitochondrial DNA. Part B. Resources, 2021
The complete chloroplast genome sequence of Iris tectorum Maximowicz, assembled with Illumina NovaSeq 6000 system platform sequencing data, was reported. The total length of the chloroplast genome of I. tectorum is 153,253 bp and its GC content is 37.89%.
Jinglu Feng, Yunjia Pan, Yulin Lin, Hui Yao   +3 more
doaj   +1 more source

Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms

BMC Genomics, 2020
Background The increasing demand of single-cell RNA-sequencing (scRNA-seq) experiments, such as the number of experiments and cells queried per experiment, necessitates higher sequencing depth coupled to high data quality. New high-throughput sequencers,
Austin N. Southard-Smith, Alan J. Simmons, Bob Chen, Angela L. Jones, Marisol A. Ramirez Solano, Paige N. Vega, Cherie’ R. Scurrah, Yue Zhao, Michael J. Brenan, Jiekun Xuan, Martha J. Shrubsole, Ely B. Porter, Xi Chen, Colin J. H. Brenan, Qi Liu, Lauren N. M. Quigley, Ken S. Lau   +16 more
doaj   +1 more source

Complete mitochondrial genome sequence of Acer miaotaiense (Aceraceae)

Mitochondrial DNA. Part B. Resources, 2022
Acer miaotaiense P. C. Tsoong is a rare and endangered tree endemic to the Qinling Mountains of China and is listed as a national third-class protected plant.
Dan Liu, Ping Ding, Hai-Li Guo, Ying Chen, Kun Zhao, Hai-Ping Yang, Ting Xu, Li-Jiang Liu, Qi Jing, Shang-Jun Han, Bo-Qiang Tong, Wen-Qing Li   +11 more
doaj   +1 more source

Genome sequence dataset of Bacillus altitudinis strain ST14 isolated from Tunggak River in Gebeng Industrial Park, Kuantan, Pahang

Data in Brief, 2022
Bacillus sp. has been reported to be involved in the biodegradation of various hydrocarbon pollutants which can potentially be useful in cleaning up hydrocarbon pollutants. Here we report the draft genome of Bacillus altitudinis strain ST14 isolated from
Asmadamia Abdul Aziz, Azuan Syafiq Zulbahri, Mohd Faez Sharif, Mohd Azrul Naim Mohamad, Han Min Gan, Nur Hafizah Azizan   +5 more
doaj   +1 more source

Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing.

PLoS ONE, 2023
Massively parallel, second-generation short-read DNA sequencing has become an integral tool in biology for genomic studies. Offering highly accurate base-pair resolution at the most competitive price, the technology has become widespread.
Ashley Jones, David Stanley, Scott Ferguson, Benjamin Schwessinger, Justin Borevitz, Norman Warthmann   +5 more
doaj   +1 more source

First record of the complete mitochondrial genome and phylogenetic analysis of Limnodrilus hoffmeisteri Claparède, 1862 (Annelida; Clitellata; Oligochaeta)

Mitochondrial DNA. Part B. Resources, 2022
The complete mitochondrial genome of Limnodrilus hoffmeisteri was analyzed using the Illumina NovaSeq 6000 platform. The length of the complete mitochondrial genome was 15,972 bp.
Jeounghee Lee, Jongwoo Jung
doaj   +1 more source

Deciphering the mitochondrial genome of Juglans mandshurica (Juglandaceae)

Mitochondrial DNA. Part B. Resources, 2023
Juglans mandshurica Maxim., 1856 is a second-class, protected, rare tree species of high economic and ecological value. We elucidated the complete mitochondrial (mt) genome of J. mandshurica using the Illumina Novaseq 6000 and Nanopore platforms.
Xun Su, Qiong Liu, Haili Guo, Dechang Hu, Dan Liu, Zihao Wang, Ping Zhang   +6 more
doaj   +1 more source

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences. [PDF]

, 2013
The high throughput and cost-effectiveness afforded by short-read sequencing technologies, in principle, enable researchers to perform 16S rRNA profiling of complex microbial communities at unprecedented depth and resolution. Existing Illumina sequencing
Niranjan Nagarajan, Eliza Xin Pei Ho, Andreas Wilm (7951), Hibberd, Martin Lloyd, Louie Low (400408), Nagarajan, Niranjan, Eliza Xin Pei Ho (400407), Ong, Swee Hoe, Christophe Lay (400406), Martin Lloyd Hibberd (259920), Low, Louie, Kukkillaya, Vinutha Uppoor, Andreas Wilm, Martin Lloyd Hibberd, Lay, Christophe, Niranjan Nagarajan (131213), Wilm, Andreas, Ho, Eliza Xin Pei, Vinutha Uppoor Kukkillaya (400405), Swee Hoe Ong, Louie Low, Swee Hoe Ong (400404), Vinutha Uppoor Kukkillaya, Christophe Lay   +23 more
core   +1 more source