LPInsider: a webserver for lncRNA–protein interaction extraction from the literature [PDF]
BMC Bioinformatics, 2022 Background Long non-coding RNA (LncRNA) plays important roles in physiological and pathological processes. Identifying LncRNA–protein interactions (LPIs) is essential to understand the molecular mechanism and infer the functions of lncRNAs.
Ying Li +6 more
doaj +4 more sources
LncPTPred: predicting lncRNA-protein interaction based on crosslinking and immunoprecipitation (CLIP-Seq) data. [PDF]
Brief BioinformAbstract Long noncoding RNA (lncRNA)–protein Interaction (LPI) across diverse biological systems, directly and indirectly, regulates various cellular processes. Experimental assays to recognize the protein binding partners of lncRNAs are highly time-consuming and expensive.
Das G, Das T, Ghosh Z.
europepmc +5 more sources
Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks
Scientific Reports, 2017 Massive studies have indicated that long non-coding RNAs (lncRNAs) are critical for the regulation of cellular biological processes by binding with RNA-related proteins.
Yun Xiao, Jingpu Zhang, Lei Deng
doaj +3 more sources
Predicting lncRNA-protein interactions with bipartite graph embedding and deep graph neural networks
Frontiers in Genetics, 2023 Background: Long non-coding RNAs (lncRNAs) play crucial roles in numerous biological processes. Investigation of the lncRNA-protein interaction contributes to discovering the undetected molecular functions of lncRNAs.
Yuzhou Ma +3 more
doaj +3 more sources
IEEE Access, 2019 Long non-coding RNA, also known as lncRNA, is a series of single-stranded polynucleotides (no less than 200 nucleotides each), consisting of non-protein coding transcripts.
Cong Shen +4 more
doaj +3 more sources
PRPI-SC: an ensemble deep learning model for predicting plant lncRNA-protein interactions [PDF]
BMC Bioinformatics, 2021 Background Plant long non-coding RNAs (lncRNAs) play vital roles in many biological processes mainly through interactions with RNA-binding protein (RBP).
Haoran Zhou +3 more
doaj +3 more sources
Long Non-Coding RNA Encoded by Infectious Bronchitis Virus Facilitates Viral Replication via Direct Interaction with G3BP2 and Expression Regulation of a Novel Host MicroRNA [PDF]
Veterinary SciencesLong non-coding RNAs (lncRNAs) encoded by viruses play crucial roles in viral infection, pathogenesis processes, the interaction between viruses and hosts, and immune escape.
Mingjing Zhang +5 more
doaj +2 more sources
LPI-SKF: Predicting lncRNA-Protein Interactions Using Similarity Kernel Fusions [PDF]
Frontiers in Genetics, 2020 Long non-coding RNAs (lncRNAs) play an important role in serval biological activities, including transcription, splicing, translation, and some other cellular regulation processes.
Yuan-Ke Zhou +4 more
doaj +3 more sources
Integrated Bioinformatics Analysis Reveals the Impact of SHEV ORF3-Related LncRNA Network on Bile Secretion Pathway (ko 04976) in HepG2 Cells [PDF]
Veterinary Sciences(1) Background: Swine hepatitis E (SHE) is an emerging zoonotic disease caused by the swine hepatitis E virus (SHEV). The open reading frame 3 (ORF3) protein is a recognized virulence factor of SHEV.
Hanwei Jiao +7 more
doaj +2 more sources
Capsule-LPI: a LncRNA-protein interaction predicting tool based on a capsule network. [PDF]
BMC Bioinformatics, 2021 Abstract Background Long noncoding RNAs (lncRNAs) play important roles in multiple biological processes. Identifying LncRNA–protein interactions (LPIs) is key to understanding lncRNA functions. Although some LPIs computational methods have been developed, the LPIs prediction problem remains challenging.
Li Y +5 more
europepmc +5 more sources