Results 101 to 110 of about 3,271,883 (209)

Additional file 12: of Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

, 2018
Figure S6. TCP-like motifs. Logo representation of all matches to the motifs found by MEME. Datasets are from (A) AP1 (motif similar to TCP type II motif); (B) SEP3 (motif similar to TCP type I motif); (C) SEP3 (motif similar to TCP type II motif) and (D) SOC1 (motif similar to TCP type II motif). (PDF 65 kb)
Aerts, Niels, de Bruijn, Suzanne, van Mourik, Hilda, Angenent, Gerco, van Dijk, Aalt   +4 more
openaire   +1 more source

Structural Variations Contribute to Subspeciation and Yield Heterosis in Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Yield heterosis has been extensively exploited in hybrid breeding, with intersubspecific hybrids often exhibiting the most pronounced effects. However, developing elite hybrids remains a laborious and time‐consuming process. The genetic basis of heterosis has been debated for over a century, hindered largely by the lack of high‐quality genomes.
Zhiwu Dan, Yunping Chen, Wenchao Huang
wiley   +1 more source

Domain structure of T. dicoccoides MADS-box proteins.

Conserved domain predictions for the 117 T. dicoccoides MADS-box proteins are presented. (PDF)
Ghader Mirzaghaderi (3091797)
core   +1 more source

Additional file 8: of Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

, 2018
Figure S3. Central enrichment of different CArG-box variants in different protein datasets. Kernel density plot of matches to the motif in peak centers relative to the peak summit. Plots are from (A) AG (B) AP1 (C) AP3 (D) FLC (E) PI (F) SEP3 (G) SOC1 (H) SVP. (PDF 251 kb)
Aerts, Niels, de Bruijn, Suzanne, van Mourik, Hilda, Angenent, Gerco, van Dijk, Aalt   +4 more
openaire   +1 more source

Programmable Domestication: CRISPR, Pan‐Genomics and System Level Engineering for Next‐Generation Crops

Plant Biotechnology Journal, EarlyView.
Conceptual overview of programmable de novo domestication from genetic diversity discovery to crop deployment. The framework connects diverse germplasm and genomic resources with three trajectory pathways. Adaptive Rescue, Agronomic Refinement and Novel Chassis defined by biological distance, engineering complexity and breeding objectives.
Muhammad Mubashar Zafar, Hina Firdous, Ayesha Siddiqua, Ayesha Naveed, Abdul Razzaq, Sadam Munawar, Aqsa Ijaz, Zunaira Anwar, Sezai Ercisli, Xuefei Jiang, Qiao Fei   +10 more
wiley   +1 more source

Additional file 10: of Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

, 2018
Figure S4. GA/CT-rich motif. Logo representation of all matches to the motifs found by MEME. Datasets are from (A) AG (B) AP1 (C) AP3 (D) PI (E) SEP3 (F) SOC1. (PDF 122 kb)
Aerts, Niels, de Bruijn, Suzanne, van Mourik, Hilda, Angenent, Gerco, van Dijk, Aalt   +4 more
openaire   +1 more source

Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish [PDF]

, 2011
Tripartite motif proteins (TRIM) constitute a large family of proteins containing a RING-Bbox-Coiled Coil motif followed by different C-terminal domains. Involved in ubiquitination, TRIM proteins participate in many cellular processes including antiviral
Pierre Pontarotti, Pnontarotti, P., Lieke M van der Aa, van der Aa Lieke M., Benmansour, Abdenour, Abdenour Benmansour, Jouneau Luc, Benmansour, A., Pontarotti Pierre, Boudinot Pierre, Van Der Aa, Lieke M, Levraud, Jean-Pierre, Birolat, V., Levraud, L. P., Boudinot, Pierre, Du Pasquier Louis, Jouneau, Luc, Louis Du Pasquier, Benmansour Abdenour, Valérie Briolat, Jean-Pierre Levraud, Pasquier, L., du, Briolat Valérie, Aa, L.M., van der, Pontarotti, P., du Pasquier, L., Van der aa, Lieke, Jouneau, L., Levraud, J.P., Pontarotti, Pierre, van der Aa, L.M., Du Pasquier, Louis, Boudinot, P., Briolat, Valérie, Luc Jouneau, Lieke M. van der Aa, Levraud Jean-Pierre, Boudinot, R., Pierre Boudinot, van der Aa, L. M.   +39 more
core   +1 more source

Additional file 7: of Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

, 2018
Figure S2. CArG-box like motifs in unique peaks in PI, SEP3 and SOC1 datasets. Logo representation of all matches to the motif found by MEME. Logos are from (A) PI (B) SEP3 (C) SOC1. (PDF 126 kb)
Aerts, Niels, de Bruijn, Suzanne, van Mourik, Hilda, Angenent, Gerco, van Dijk, Aalt   +4 more
openaire   +1 more source

An Intronic Structural Variant in GhEBS1 Drives Cotton Fruit Size Divergence by Modulating Chromatin Accessibility and Gene Expression

Plant Biotechnology Journal, EarlyView.
ABSTRACT Fruit size is not only a crucial fitness trait in plant evolution but also an important agronomic target in crop domestication and improvement, yet its regulatory mechanisms remain poorly characterized. Here, we identified an F‐box E3 ubiquitin ligase gene, GhEBS1 (ENLARGED BOLL SIZE 1), as a positive regulator of cotton boll size via map ...
Furong Wang, Yu Chen, Zhangqiang Song, Ao Pan, Xuehan Huo, Jingxia Zhang, Yang Gao, Zhecheng Yuan, Mengchen Zhu, Mingyang Lei, Pei Zhang, Juan Zhou, Zhaohai Du, Shengli Wang, Jiaojiao Feng, Minghui Feng, Chuanban Li, Shoupu He, Tianzhen Zhang, Jun Zhang   +19 more
wiley   +1 more source

Additional file 3: of Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

, 2018
Figure S1. Clustering of original peak sets and peaks sets after re-analysis. Hierarchical clustering with complete linkage (function hclust in R) was performed using as distance measure between two peak sets the average distance between peaks in one set and in the other. Peaks-sets after re-analysis are indicated with name of the transcription factor,
Aerts, Niels, de Bruijn, Suzanne, van Mourik, Hilda, Angenent, Gerco, van Dijk, Aalt   +4 more
openaire   +1 more source