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A Non-Metaproteomics Researchers' View on Metaproteomics in Microbiome Research. [PDF]
ProteomicsMetaproteomics, an emerging field among the omic techniques, holds great promise for unraveling the function of microbiomes in host health and our environment.
Aho VTE +5 more
europepmc +7 more sources
Advances in the clinical use of metaproteomics
Expert Review of Proteomics, 2023 Wolf M, Schallert K, Knipper L, et al. Advances in the clinical use of metaproteomics. Expert review of proteomics. 2023.INTRODUCTION: Investigating the taxonomic and functional composition of human microbiomes can aid in the understanding of disease ...
Maximilian Wolf +13 more
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mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation [PDF]
Biology Direct, 2019 Metaproteomics allows to decipher the structure and functionality of microbial communities. Despite its rapid development, crucial steps such as the creation of standardized protein search databases and reliable protein annotation remain challenging.
Johannes Werner +3 more
doaj +2 more sources
Editorial for Special Issue: Metaproteomics [PDF]
Proteomes, 2019 As the proteome-level counterpart of metagenomics, metaproteomics extends conventional single-organism proteomics and allows researchers to characterize the entire protein complement of complex microbiomes on a large scale [...
Thilo Muth +3 more
core +6 more sources
Increasing the power of interpretation for soil metaproteomics data
Microbiome, 2021 Background Soil and sediment microorganisms are highly phylogenetically diverse but are currently largely under-represented in public molecular databases. Their functional characterization by means of metaproteomics is usually performed using metagenomic
Virginie Jouffret +5 more
doaj +2 more sources
The landscape and perspectives of the human gut metaproteomics [PDF]
Molecular & Cellular ProteomicsThe human gut microbiome is closely associated with human health and diseases. Metaproteomics has emerged as a valuable tool for studying the functionality of the gut microbiome by analyzing the entire proteins present in microbial communities.
Figeys, Daniel +2 more
core +4 more sources
Introduction to metaproteomics
, 2021 International audienceMetaproteomics is a key methodology for understanding the function of microbiomes by efficiently connecting genomic and metabolic information.
Armengaud, Jean
core +2 more sources
NovoLign : metaproteomics by sequence alignment
ISME Communications: Tremendous advances in mass spectrometric and bioinformatic approaches have expanded proteomics into the field of microbial ecology. The commonly used spectral annotation method for metaproteomics data relies on database searching, which requires ...
Van Ede, Jitske M. +8 more
core +4 more sources
Bioinformatic workflows for metaproteomics
The strong influence of microbiomes on areas such as ecology and human health has become widely recognized in the past years. Accordingly, various techniques for the investigation of the composition and function of microbial community samples have been ...
Holstein, Tanja, Muth, Thilo
core +3 more sources
Metaproteomics of Soil Microbial Communities
, 2019 Chapter 16 - Metaproteomics of Soil Microbial ...
Paolo Nannipieri +4 more
core +4 more sources