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Unipept web services for metaproteomics analysis [PDF]
Bioinformatics, 2016 Summary: Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of ...
Willems, Toon +5 more
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Proteomes, 2017 Metaproteomics is the characterization of all proteins being expressed by a community of organisms in a complex biological sample at a single point in time. Applications of metaproteomics range from the comparative analysis of environmental samples (such
Michael Riffle +6 more
doaj +3 more sources
Metaproteomics of Freshwater Microbial Communities
, 2019 Recent advances in metaproteomics have provided us a link between genomic expression and functional characterization of environmental microbial communities.
Narciso Couto +11 more
core +5 more sources
Syntrophic microbial consortia can contribute significantly to the activity and function of anoxic ecosystems, yet are often too rare to study their in situ physiologies using traditional molecular methods.
Skyler Friedline, Ryan Ziels
core +2 more sources
Critical steps in an environmental metaproteomics workflow
Environmental MicrobiologyEnvironmental metaproteomics is a rapidly advancing field that provides insights into the structure, dynamics, and metabolic activity of microbial communities.
Leanne Pearson (21128963) +2 more
core +3 more sources
The Peptonizer2000: Bringing Confidence to Metaproteomics. [PDF]
J Proteome ResAbstract Metaproteomics, the large-scale study of proteins from microbial communities, faces challenges in identifying species due to similarities in protein sequences across different organisms. Current methods often rely on simple counting of matches between proteins and taxa, which can lead to low accuracy.
Holstein T +6 more
europepmc +2 more sources
npj Biofilms and Microbiomes, 2023 Metaproteomics can provide valuable insights into the functions of human gut microbiota (GM), but is challenging due to the extreme complexity and heterogeneity of GM.
Jinzhi Zhao +13 more
doaj +1 more source
In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer
Research, 2022 The human oral microbiome correlates with numerous diseases, including lung cancer. Identifying the functional changes by metaproteomics helps understand the disease-related dysbiosis, yet characterizing low-abundant bacteria is challenging.
Xiaoteng Jiang +6 more
doaj +1 more source
Nature Communications, 2021 The authors present CAMPI, a large-scale multi-lab comparison of diverse metaproteomics workflows. CAMPI provides insights into the robustness of current methods, suggests further improvements to the field, and may pave the way for future community ...
Tim Van Den Bossche +44 more
doaj +1 more source
Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes
Molecular Plant-Microbe Interactions, 2022 Metaproteomics is a powerful tool for the characterization of metabolism, physiology, and functional interactions in microbial communities, including plant-associated microbiota.
Fernanda Salvato +4 more
doaj +1 more source