Results 21 to 30 of about 5,355 (193)
Unipept web services for metaproteomics analysis [PDF]
Bioinformatics, 2016 Summary: Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of ...
Willems, Toon +5 more
core +4 more sources
Metaproteomics of Freshwater Microbial Communities
, 2019 Recent advances in metaproteomics have provided us a link between genomic expression and functional characterization of environmental microbial communities.
Narciso Couto +11 more
core +5 more sources
Syntrophic microbial consortia can contribute significantly to the activity and function of anoxic ecosystems, yet are often too rare to study their in situ physiologies using traditional molecular methods.
Skyler Friedline, Ryan Ziels
core +2 more sources
Critical steps in an environmental metaproteomics workflow
Environmental MicrobiologyEnvironmental metaproteomics is a rapidly advancing field that provides insights into the structure, dynamics, and metabolic activity of microbial communities.
Leanne Pearson (21128963) +2 more
core +3 more sources
Microbiology Spectrum, 2021 A critical step in studies of the intestinal microbiome using meta-omics approaches is the preservation of samples before analysis. Preservation is essential for approaches that measure gene expression, such as metaproteomics, which is used to identify ...
Angie Mordant, Manuel Kleiner
doaj +1 more source
Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes
Molecular Plant-Microbe Interactions, 2022 Metaproteomics is a powerful tool for the characterization of metabolism, physiology, and functional interactions in microbial communities, including plant-associated microbiota.
Fernanda Salvato +4 more
doaj +1 more source
Periodontology 2000, EarlyView., 2023 Abstract This narrative review summarizes the collective knowledge on periodontal microbiology, through a historical timeline that highlights the European contribution in the global field. The etiological concepts on periodontal disease culminate to the ecological plaque hypothesis and its dysbiosis‐centered interpretation.
Georgios N. Belibasakis +5 more
wiley +1 more source
Nature Communications, 2021 The authors present CAMPI, a large-scale multi-lab comparison of diverse metaproteomics workflows. CAMPI provides insights into the robustness of current methods, suggests further improvements to the field, and may pave the way for future community ...
Tim Van Den Bossche +44 more
doaj +1 more source
MetaLP: An integrative linear programming method for protein inference in metaproteomics.
PLoS Computational Biology, 2022 Metaproteomics based on high-throughput tandem mass spectrometry (MS/MS) plays a crucial role in characterizing microbiome functions. The acquired MS/MS data is searched against a protein sequence database to identify peptides, which are then used to ...
Shichao Feng +6 more
doaj +1 more source
Biodiversity analysis of metaproteomics samples with Unipept: a comprehensive tutorial [PDF]
, 2023 Metaproteomics has become a crucial omics technology for studying microbiomes. In this area, the Unipept ecosystem, accessible at https://unipept.ugent.be, has emerged as an invaluable resource for analyzing metaproteomic data.
Bossche, Tim Van Den +5 more
core +3 more sources