Results 21 to 30 of about 7,727 (208)
Advanced Science, 2021 Fast and accurate identification of microbial pathogens is critical for the proper treatment of infections. Traditional culture‐based diagnosis in clinics is increasingly supplemented by metagenomic next‐generation‐sequencing (mNGS).
Na Zhao +18 more
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Frontiers in Microbiology, 2021 Open-ocean surface waters host a diverse community of single-celled eukaryotic plankton (protists) consisting of phototrophs, heterotrophs, and mixotrophs. The productivity and biomass of these organisms oscillate over diel cycles, and yet the underlying
Ryan D. Groussman +4 more
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Exploring the tymovirids landscape through metatranscriptomics data [PDF]
Archives of Virology, 2021 AbstractTymovirales is an order of viruses with positive-sense, single-stranded RNA genomes that mostly infect plants, but also fungi and insects. The number of tymovirid sequences has been growing in the last few years with the extensive use of high-throughput sequencing platforms.
Nicolás Bejerman, Humberto Debat
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Frontiers in Microbiology, 2020 Viable pathogenic bacteria are major biohazards that pose a significant threat to food safety. Despite the recent developments in detection platforms, multiplex identification of viable pathogens in food remains a major challenge.
Manyun Yang +13 more
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L. rhamnosus CNCM I-3690 survival, adaptation, and small bowel microbiome impact in human
Gut Microbes, 2023 Fermented foods and beverages are a significant source of dietary bacteria that enter the gastrointestinal (GI) tract. However, little is known about how these microbes survive and adapt to the small intestinal environment.
Edoardo Zaccaria +7 more
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Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models
Frontiers in Cellular and Infection Microbiology, 2021 Microbiome data are becoming increasingly available in large health cohorts, yet metabolomics data are still scant. While many studies generate microbiome data, they lack matched metabolomics data or have considerable missing proportions of metabolites ...
Jialiu Xie +12 more
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Metatranscriptomic assessment of burn wound infection clearance [PDF]
Clinical Microbiology and Infection, 2021 Peer ...
Ojala, Teija +11 more
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Gene finding in metatranscriptomic sequences [PDF]
BMC Bioinformatics, 2014 Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their ...
Ismail, Wazim, Ye, Yuzhen, Tang, Haixu
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SAMSA2: a standalone metatranscriptome analysis pipeline [PDF]
BMC Bioinformatics, 2017 AbstractBackgroundComplex microbial communities are an area of rapid growth in biology. Metatranscriptomics allows one to investigate the gene activity in an environmental sample via high-throughput sequencing. Metatranscriptomic experiments are computationally intensive because the experiments generate a large volume of sequence data and the sequences
Westreich, Samuel T +4 more
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Metatranscriptome Analysis of Bisphenol A-Exposed Aerobic Granular Sludge
Energies, 2021 Understanding of the metabolic pathways connected with a removal of micropollutant bisphenol A (BPA) may help to better design effective wastewater treatment processes.
Agnieszka Cydzik-Kwiatkowska +2 more
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