Results 41 to 50 of about 13,896 (217)

DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data

Frontiers in Microbiology, 2021
Metagenomics and metatranscriptomics are powerful methods to uncover key micro-organisms and processes driving biogeochemical cycling in natural ecosystems.
Chun-Xu Xue, Chun-Xu Xue, Heyu Lin, Xiao-Yu Zhu, Jiwen Liu, Jiwen Liu, Jiwen Liu, Yunhui Zhang, Gary Rowley, Jonathan D. Todd, Meng Li, Xiao-Hua Zhang, Xiao-Hua Zhang, Xiao-Hua Zhang   +13 more
doaj   +1 more source

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

Frontiers in Microbiology, 2018
Thiocyanate is a toxic compound produced by the mining and metallurgy industries that needs to be remediated prior to its release into the environment.
Gaofeng Ni, Sebastian Canizales, Elias Broman, Domenico Simone, Viraja R. Palwai, Daniel Lundin, Margarita Lopez-Fernandez, Tom Sleutels, Mark Dopson   +8 more
doaj   +1 more source

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

mSystems, 2021
The health, growth, and fitness of boreal forest trees are impacted and improved by their associated microbiomes. Microbial gene expression and functional activity can be assayed with RNA sequencing (RNA-Seq) data from host samples.
Andreas N. Schneider, John Sundh, Görel Sundström, Kerstin Richau, Nicolas Delhomme, Manfred Grabherr, Vaughan Hurry, Nathaniel R. Street   +7 more
doaj   +1 more source

The Human Microbiome and Recurrent Abdominal Pain in Children [PDF]

, 2010
This project explores the nature of the human intestinal microbiome in healthy children and children with recurrent abdominal pain. The overall goal is to obtain a robust knowledge base of the intestinal microbiome in children without evidence of pain or
Debasmita Mandal, Delphine Saulnier, James Versalovic, James Versalovic, Joseph Petrosino, Kevin Riehle, Maria Diaz, Richard Gibbs, Robert Shulman, Sabeen Raza, Susan Lynch, Toni-Ann Mistretta, Xiang Qin   +12 more
core   +3 more sources

Use of Metatranscriptomics in Microbiome Research [PDF]

Bioinformatics and Biology Insights, 2016
The human intestinal microbiome is a microbial ecosystem that expresses as many as 100 times more genes than the human host, thereby constituting an important component of the human holobiome, which contributes to multiple health and disease processes.
Stavros Bashiardes, Gili Zilberman-Schapira, Eran Elinav   +2 more
openaire   +4 more sources

A de-novo-assembly-based Data Analysis Pipeline for Plant Obligate Parasite Metatranscriptomic Studies

Frontiers in Plant Science, 2016
Current and emerging plant diseases caused by obligate parasitic microbes such as rusts, downy mildews, and powdery mildews threaten worldwide crop production and food safety.
Li Guo, Kelly S Allen, Kelly S Allen, Greg A Deiulio, Greg A Deiulio, Yong Zhang, Yong Zhang, Angela M Madeiras, Robert L Wick, Li-Jun Ma   +9 more
doaj   +1 more source

Using omics and integrated multi-omics approaches to guide probiotic selection to mitigate chytridiomycosis and other emerging infectious diseases

Frontiers in Microbiology, 2016
Emerging infectious diseases in wildlife are responsible for massive population declines. In amphibians, chytridiomycosis caused by Batrachochytrium dendrobatidis, Bd, has severely affected many amphibian populations and species around the world.
Eria Alaide Rebollar, Rachael E Antwis, Rachael E Antwis, Rachael E Antwis, Matthew H Becker, Lisa K Belden, Molly C Bletz, Robert M Brucker, Xavier A Harrison, Myra C Hughey, Jordan G Kueneman, Andrew H Loudon, Valerie eMcKenzie, Daniel eMedina, Kevin PC Minbiole, Louise A Rollins-Smith, Jennifer B Walke, Sophie eWeiss, Douglas C Woodhams, Reid N Harris   +19 more
doaj   +1 more source

Metatranscriptomic Analysis of Arctic Peat Soil Microbiota [PDF]

Applied and Environmental Microbiology, 2014
ABSTRACT Recent advances in meta-omics and particularly metatranscriptomic approaches have enabled detailed studies of the structure and function of microbial communities in many ecosystems. Molecular analyses of peat soils, ecosystems important to the global carbon balance, are still challenging due to the presence of ...
Tveit, Alexander Tøsdal, Tim, Urich, Svenning, Mette Marianne   +2 more
openaire   +4 more sources

Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community

mSystems, 2020
Regulatory small RNAs (sRNAs) play large-scale and essential roles in many cellular processes across all domains of life. Microbial sRNAs have been extensively studied in model organisms, but very little is known about the dynamics of sRNA synthesis and ...
Diego R. Gelsinger, Gherman Uritskiy, Rahul Reddy, Adam Munn, Katie Farney, Jocelyne DiRuggiero   +5 more
doaj   +1 more source

Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean

Frontiers in Marine Science, 2022
Microbial communities play integral roles in driving nutrient and energy transformations in the ocean, collectively contributing to fundamental biogeochemical cycles. Although it is well known that these communities are stratified within the water column,
Maria A. Cavaco, Maya P. Bhatia, Alyse K. Hawley, Monica Torres-Beltrán, Winifred M. Johnson, Krista Longnecker, Kishori Konwar, Elizabeth B. Kujawinski, Steven J. Hallam, Steven J. Hallam, Steven J. Hallam, Steven J. Hallam, Steven J. Hallam   +12 more
doaj   +1 more source