Results 51 to 60 of about 39,725 (303)

The genetics of symbiotic nitrogen fixation: Comparative genomics of 14 rhizobia strains by resolution of protein clusters

, 2012
The symbiotic relationship between legumes and nitrogen fixing bacteria is critical for agriculture, as it may have profound impacts on lowering costs for farmers, on land sustainability, on soil quality, and on mitigation of greenhouse gas emissions ...
John Howieson, Matthew Bellgard, Barrero, R., Michael Black, Moolhuijzen, Paula, Brett Chapman, Paula Moolhuijzen, Moolhuijzen, P., Roberto Barrero, Bellgard, M., Chapman, B., Howieson, J., Hungria, M., Black, M., Mariangela Hungria   +14 more
core   +1 more source

C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison [v1; ref status: indexed, http://f1000r.es/27n]

F1000Research, 2013
We present C-Sibelia, a highly accurate and easy-to-use software tool for comparing two closely related bacterial genomes, which can be presented as either finished sequences or fragmented assemblies. C-Sibelia takes as input two FASTA files and produces:
Ilya Minkin, Hoa Pham, Ekaterina Starostina, Nikolay Vyahhi, Son Pham   +4 more
doaj   +1 more source

The human gut microbiome across the life course

FEBS Letters, EarlyView.
Despite significant individual variation and continuous change throughout life, the human gut microbiome follows some life stage‐specific trends. This article provides a brief overview of how gut microbiome composition shifts across different phases of life. Created in BioRender. Özkurt, E. (2026) https://BioRender.com/8q4nrnc.
Alise J. Ponsero, Basak Bahcivanci, Antonietta Hayhoe, Animesh Acharjee, Ezgi Özkurt   +4 more
wiley   +1 more source

Exploratory experimentation and scientific practice: Metagenomics and the proteorhodopsin case [PDF]

, 2008
Exploratory experimentation and high-throughput molecular biology appear to have considerable affinity for each other. Included in the latter category is metagenomics, which is the DNA-based study of diverse microbial communities from a vast range of non-
O'Malley, Maureen
core  

AlphaFold Database Structure Extractor: a web server and API to download AlphaFold structures using common protein accessions

BMC Bioinformatics
Background The AlphaFoldDB Structure Extractor ( https://project.iith.ac.in/sharmaglab/alphafoldextractor/ ) is an open-access web server and API toolkit designed to facilitate the bulk download of predicted protein structures from the AlphaFold Database
Niharika Saraf, Vishvesh Karthik, Gaurav Sharma   +2 more
doaj   +1 more source

Salmonella lipopolysaccharide‐containing supported lipid bilayers as platforms to study bacteriophage interactions

FEBS Letters, EarlyView.
We present robust protocols for the preparation of supported lipid bilayers (SLBs) incorporating either Salmonella smooth LPS or outer membrane vesicles (OMVs). We use a combination of quartz crystal microbalance with dissipation (QCM‐D) and fluorescence microscopy to both characterize the SLBs of various compositions and to probe their interactions ...
Hudson P. Pace, Alyssa Borges, Charles Arnaud, Tove Karlsson, Nina K. Bröker, Stefanie Barbirz, Marta Bally   +6 more
wiley   +1 more source

Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling

, 2008
Vijayendran C, Barsch A, Friehs K, Niehaus K, Becker A, Flaschel E. Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling. GENOME BIOLOGY.
Flaschel, Erwin, Vijayendran, Chandran, Friehs, Karl, Niehaus, Karsten, Barsch, Aiko, Becker, Anke   +5 more
core   +1 more source

Microbiome−host proteostasis crosstalk—An emerging perspective on mechanisms and interventions toward healthy longevity

FEBS Letters, EarlyView.
Proteostasis and the gut microbiota play a key role in shaping host physiology. Microbiota‐derived metabolites, vitamins, and RNA modulate host proteostasis. Findings from model systems, including C. elegans, indicate microbes can either stabilize or disrupt host proteostasis.
Abhishek Anil Dubey, Maria Ermolaeva
wiley   +1 more source

Evolution of tryptophan biosynthetic pathway in microbial genomes: a comparative genetic study [PDF]

Systems and Synthetic Biology, 2013
Biosynthetic pathway evolution needs to consider the evolution of a group of genes that code for enzymes catalysing the multiple chemical reaction steps leading to the final end product. Tryptophan biosynthetic pathway has five chemical reaction steps that are highly conserved in diverse microbial genomes, though the genes of the pathway enzymes show ...
V K, Priya, Susmita, Sarkar, Somdatta, Sinha   +2 more
openaire   +2 more sources

Integration of genomics and proteomics into marine microbial ecology

, 2007
Genomics and proteomics of microorganisms are revolutionizing our understanding of marine microbial ecology. In this essay we address this by discussing (1) what microbial genome resources are available for marine ecologists, (2) how single-organism ...
Burg, D, Ng, Charmaine, Thomas, Torsten, Ting, Lily, Cavicchioli, R, Egan, S, Ng, C, Egan, Suhelen, Burg, Dominic, Cavicchioli, Ricardo, Ting, L   +10 more
core   +1 more source