Results 41 to 50 of about 138,057 (371)

Extraction of Organic Compounds From Lacustrine Oil-Prone Shales and the Effect on Nanopore

Frontiers in Earth Science, 2022
Lacustrine oil-prone shale at the oil-generation stage develops a large number of nanopores; however, the influence of fluid–shale interactions on the nanopores of lacustrine shale is poorly understood.
Huairen Cao, Huairen Cao, Deping Zhang, Xiaoyu Wang, Xiaoyu Wang, Deliang Fu   +5 more
doaj   +1 more source

Detecting DNA cytosine methylation using nanopore sequencing

Nature Methods, 2017
In nanopore sequencing devices, electrolytic current signals are sensitive to base modifications, such as 5-methylcytosine (5-mC). Here we quantified the strength of this effect for the Oxford Nanopore Technologies MinION sequencer.
Jared T. Simpson, Jared T. Simpson, R. Workman, P. Zuzarte, Matei David, L. Dursi, W. Timp   +6 more
semanticscholar   +1 more source

High Prevalence of blaCTXM–1/IncI1-Iγ/ST3 Plasmids in Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolates Collected From Domestic Animals in Guadeloupe (French West Indies)

Frontiers in Microbiology, 2022
Extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL-E) have been classified in the group of resistant bacteria of highest priority. We determined the prevalence of ESBL-E collected in feces from household and shelter pets in Guadeloupe ...
Gaëlle Gruel, David Couvin, Stéphanie Guyomard-Rabenirina, Guillaume Arlet, Jean-Christophe Bambou, Matthieu Pot, Xavier Roy, Antoine Talarmin, Benoit Tressieres, Séverine Ferdinand, Sébastien Breurec, Sébastien Breurec, Sébastien Breurec   +12 more
doaj   +1 more source

Nanopore Fabrication by Controlled Dielectric Breakdown

, 2013
Nanofabrication techniques for achieving dimensional control at the nanometer scale are generally equipment-intensive and time-consuming. The use of energetic beams of electrons or ions has placed the fabrication of nanopores in thin solid-state ...
Briggs, Kyle, Kwok, Harold, Tabard-Cossa, Vincent   +2 more
core   +3 more sources

Fast nanopore sequencing data analysis with SLOW5

Nature Biotechnology, 2022
Nanopore sequencing depends on the FAST5 file format, which does not allow efficient parallel analysis. Here we introduce SLOW5, an alternative format engineered for efficient parallelization and acceleration of nanopore data analysis.
Hasindu Gamaarachchi, Hiruna Samarakoon, Sasha P. Jenner, James M. Ferguson, T. Amos, Jillian M. Hammond, Hassaan Saadat, Martin A. Smith, S. Parameswaran, I. Deveson   +9 more
semanticscholar   +1 more source

Polymer Translocation Dynamics in the Quasi-Static Limit

, 2013
Monte Carlo (MC) simulations are used to study the dynamics of polymer translocation through a nanopore in the limit where the translocation rate is sufficiently slow that the polymer maintains a state of conformational quasi-equilibrium.
Alberts B., Anthony C. M. McCaffrey, de Gennes P.-G., Fatehi Hassanabad M., James M. Polson, Lodish H.   +5 more
core   +1 more source

Correlation Dynamics and Enhanced Signals for Serial DNA Sequencing

, 2013
Nanopore based sequencing has demonstrated significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing.
Ahmed, Towfiq, Balatsky, Alexander V., Di Ventra, Massimiliano, Haraldsen, Jason T., Rehr, John J., Schuller, Ivan K.   +5 more
core   +1 more source

MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage

Frontiers in Microbiology, 2017
Wastewater treatment plants (WWTPs) functioned as the intersection between the human society and nature environment, are receiving increasingly more attention on risk assessment of the acquisition of environmental antibiotic resistance genes (ARGs) by ...
Yu Xia, An-Dong Li, Yu Deng, Xiao-Tao Jiang, Li-Guan Li, Tong Zhang   +5 more
doaj   +1 more source

Ultrarapid and high-resolution HLA class I typing using transposase-based nanopore sequencing applied in pharmacogenetic testing

Frontiers in Genetics, 2023
Nanopore sequencing has been examined as a method for rapid and high-resolution human leukocyte antigen (HLA) typing in recent years. We aimed to apply ultrarapid nanopore-based HLA typing for HLA class I alleles associated with drug hypersensitivity ...
Nampeung Anukul, Piroon Jenjaroenpun, Piroon Jenjaroenpun, Chonticha Sirikul, Natnicha Wankaew, Natnicha Wankaew, Pattaraporn Nimsamer, Pattaraporn Nimsamer, Ekkapong Roothumnong, Manop Pithukpakorn, Manop Pithukpakorn, Nipapan Leetrakool, Thidathip Wongsurawat, Thidathip Wongsurawat, Thidathip Wongsurawat   +14 more
doaj   +1 more source

Controlling ion transport through nanopores: modeling transistor behavior [PDF]

, 2018
We present a modeling study of a nanopore-based transistor computed by a mean-field continuum theory (Poisson-Nernst-Planck, PNP) and a hybrid method including particle simulation (Local Equilibrium Monte Carlo, LEMC) that is able to take ionic ...
Boda, Dezső, Dallos, András, Matejczyk, Bartłomiej, Mádai, Eszter, Valiskó, Mónika   +4 more
core   +2 more sources