Nucleic Acid Conformation Influences Postsynthetic Suzuki-Miyaura Labeling of Oligonucleotides. [PDF]
Bioconjug Chem, 2020 Chemoselective transformations that work under physiological conditions have emerged as powerful tools to label nucleic acids in cell-free and cellular environments.
Walunj MB, Srivatsan SG.
europepmc +4 more sources
Modelling aptamers with nucleic acid mimics (NAM): From sequence to three-dimensional docking
PLoS ONE, 2022 Aptamers are single-stranded oligonucleotides, formerly evolved by Systematic Evolution of Ligands by EXponential enrichment (SELEX), that fold into functional three-dimensional structures.
Ricardo Oliveira +5 more
doaj +3 more sources
Conformational classification of functional nucleic acids [PDF]
Nucleic Acids Symposium Series, 1999 The kink parameters would provide the tolerant aspect for irregular helical structure of nucleic acid. Using these kink parameters, the classification of conformation space was carried for the functional nucleic acid molecules. The kink parameters could afford us the simple structural aspects about the constructive parts of functional molecules.
Satoshi Fujii
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Nucleic Acid-tagged Peptides: Encoding Libraries and Controlling Dimerization and Conformation
CHIMIA, 2013 Recent progress in the synthesis, screening, and self-assembly of nucleic acid–tagged peptidic libraries is reviewed.
Kalyan K. Sadhu, Nicolas Winssinger
doaj +3 more sources
Sensing the structural and conformational properties of single-stranded nucleic acids using electrometry and molecular simulations [PDF]
Scientific ReportsInferring the 3D structure and conformation of disordered biomolecules, e.g., single stranded nucleic acids (ssNAs), remains challenging due to their conformational heterogeneity in solution.
Rowan Walker-Gibbons +4 more
doaj +2 more sources
Nucleic Acid Reactivity and Conformation
Journal of Biological Chemistry, 1973 Robert Shapiro +3 more
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Nucleic acid stain-dependent single strand conformation polymorphisms
BioTechniques, 2004 David R. McKee, M. Scott Thomson
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Conformations of Single-Stranded Nucleic Acids in Solution [PDF]
Biophysical Journal, 2017 Alex Plumridge +2 more
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Developing Community Resources for Nucleic Acid Structures
Life, 2022 In this review, we describe the creation of the Nucleic Acid Database (NDB) at Rutgers University and how it became a testbed for the current infrastructure of the RCSB Protein Data Bank. We describe some of the special features of the NDB and how it has
Helen M. Berman +2 more
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Effects of 2'-O-methyl nucleotide substitution on EcoRI endonuclease cleavage activities. [PDF]
PLoS ONE, 2013 To investigate the effect of sugar pucker conformation on DNA-protein interactions, we used 2'-O-methyl nucleotide (2'-OMeN) to modify the EcoRI recognition sequence -TGAATTCT-, and monitored the enzymatic cleavage process using FRET method.
Guojie Zhao +4 more
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