Results 201 to 210 of about 11,306,965 (261)

MitoNumt: A Workflow for Recovering Mitochondrial Genomes From Long‐Read Data and Detecting NUMT Contamination in Mitochondrial Genome Assemblies

Molecular Ecology Resources, Volume 26, Issue 7, October 2026.
ABSTRACT Nuclear mitochondrial DNA segments (NUMTs) are genomic DNA fragments that originate from historical insertions of mitochondrial DNA sequences into the nuclear genome. During mitochondrial genome (mtgenome) assembly from short‐read genome sequencing data, NUMT fragments may be misidentified and incorporated into mtgenome assemblies, leading to ...
Ruidong Cao, Tong Xin, Yubo Hao, Yibo Hu
wiley   +1 more source

Oxford Nanopore Technologies Sequencing and Targeted Amino Acid Metabolomics Reveal Spatially Segregated Microbial Hijacking and Metabolic Collapse During <i>Trichoderma</i> Infection of Golden Ear Mushroom. [PDF]

Foods
Xu Y, Huang Y, Ye L, Yu J, Huang Z, Yang X, Tian Q, Zhang B, Liu Y, Li X.   +9 more
europepmc   +1 more source

Rapid Oxford Nanopore Technologies MinION Sequencing Workflow for Campylobacter jejuni Identification in Broilers on Site—A Proof-of-Concept Study [PDF]

Animals (Basel), 2022
Marin C, Marco-Jiménez F, Martínez-Priego L, De Marco-Romero G, Soriano-Chirona V, Lorenzo-Rebenaque L, D'Auria G.   +6 more
europepmc   +1 more source

ITSxRust: ITS Region extraction with partial‐chain recovery and structured diagnostics for long‐read amplicon sequencing

Methods in Ecology and Evolution, Volume 17, Issue 10, Page 2843-2853, October 2026.
Abstract Long‐read amplicon sequencing is now routine for fungal metabarcoding, and locating the internal transcribed spacer (ITS) subregions within reads has become a throughput bottleneck. Existing extractors were designed for shorter reads and for datasets in which near‐identical sequences are common, and neither assumption holds for Oxford Nanopore
Aaron O'Brien, Catalina Lagos, Kiara Fernández, Bárbara Ojeda, Pilar Parada   +4 more
wiley   +1 more source

Challenges in Transcriptome Applications Using Oxford Nanopore Sequencing Technology

Journal of Computer Science & Systems Biology, 2017
openaire   +1 more source

Elucidating the Role of SET as a Key Contributor to Neurodevelopmental Disability Within the 9q34.11 Deletion Syndrome Interval

Clinical Genetics, Volume 110, Issue 4, Page 438-448, October 2026.
This study reports a female proband with a de novo 9q34.11 deletion affecting SET, who underwent a 28‐year diagnostic odyssey after an atypical Rett syndrome clinical diagnosis. Genomic and proteomics analyses confirmed SET haploinsufficiency, refining the critical 9q34.11 region, and supporting speech therapy benefits in improving meaningful ...
Angelo Condell, Elaine Zhang, Tim Sikora, Sean Massey, Nicole J. Van Bergen, Min Wang, Cas Simons, Katrina M. Bell, Daniella H. Hock, David A. Stroud, David Francis, Wendy A. Gold, Martin B. Delatycki, John Christodoulou, Simranpreet Kaur   +14 more
wiley   +1 more source

Comparison of a Multiplex Real-Time PCR Technique with Oxford Nanopore Technologies Next-Generation Sequencing for Identification of SARS-CoV-2 Variants of Concern.

Intervirology, 2023
Ahmadi Z, Maleki A, Eybpoosh S, Fereydouni Z, Tavakoli M, Kashanian S, Farhan Asadi L, Nemati AH, Salehi-Vaziri M.   +8 more
europepmc   +2 more sources

An Oxford Nanopore Technologies-Based Sequencing Assay for Molecular Diagnosis of Phenylketonuria and Variant Frequencies in a Turkish Cohort. [PDF]

Int J Genomics
Tuncel G, Balcı MC, Akan G, Kazan HH, Özgen Ö, Özketen AÇ, Karaca M, Gedikbaşı A, Atalar F, Gökçay GF.   +9 more
europepmc   +1 more source

Serotypic and Genomic Diversity of Vibrio anguillarum in Rainbow Trout Farms in Turkey: Implications for Vibriosis Control and Vaccine Candidate Selection

Journal of Fish Diseases, Volume 49, Issue 10, October 2026.
ABSTRACT Outbreaks of vibriosis caused by Vibrio anguillarum are a persistent constraint on rainbow trout (Oncorhynchus mykiss) aquaculture. However, information on the population structure of field strains in Turkey has been lacking. Here, we report the first systematic serotypic, proteomic, and genomic characterization of 23 V.
Soner Altun, Muhammed Duman, Jesús L. Romalde, Nihed Ajmi, Gorkem Tasci, Cuneyt Ozakin, Nazmiye Ulku Tuzemen, Bekir Akça, Sebahattin Ergün, Sevdan Yılmaz, Izzet Burcin Saticioglu   +10 more
wiley   +1 more source

Exploring temperature-dependent transcriptomic adaptations in Yersinia pestis using direct cDNA sequencing by Oxford Nanopore Technologies. [PDF]

Sci Rep
Robin B, Baillez A, Le Guillouzer S, Lecoeur C, Sebbane F, Bontemps-Gallo S.   +5 more
europepmc   +1 more source