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The goat pan-genome reveals patterns of gene loss during domestication [PDF]
Journal of Animal Science and BiotechnologyBackground Unveiling genetic diversity features and understanding the genetic mechanisms of diverse goat phenotypes are pivotal in facilitating the preservation and utilization of these genetic resources.
Jiaxin Liu +5 more
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A pan-Zea genome map for enhancing maize improvement [PDF]
Genome Biology, 2022 Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding challenges. However, both a super pan-genome for the Zea genus and a comprehensive genetic variation map for maize breeding are still lacking.
Songtao Gui +12 more
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PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks [PDF]
Nature CommunicationsPan-genome analysis is a crucial method for studying genomic dynamics. By creating pan-genome maps for prokaryotic organisms, we can gain valuable insights into their genetic diversity and ecological adaptability.
Congfan Bu +11 more
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From map to blueprint: the plant pan-genome unraveling genetic mysteries and powering precision breeding [PDF]
Frontiers in Plant ScienceWith the rapid advancement of sequencing technologies and bioinformatics, coupled with significant progress in sequencing efficiency and reduced costs, substantial breakthroughs have been achieved in plant functional genomics, evolutionary genetics, and ...
Chong Liu +6 more
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Super pan-genome reveals extensive genomic variations associated with phenotypic divergence in Actinidia [PDF]
Molecular HorticultureKiwifruit is an economically and nutritionally important horticultural fruit crop worldwide. The genomic data of several kiwifruit species have been released, providing an unprecedented opportunity for pan-genome analysis to comprehensively investigate ...
Xiaofen Yu +9 more
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Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal, 2021 Advances in sequencing technology have led to the increased availability of genomes and metagenomes, which has greatly facilitated microbial pan-genome and metagenome analysis in the community.
Chaofang Zhong +3 more
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Oryza pan-genomics: A new foundation for future rice research and improvement
Crop Journal, 2021 The wild rice species in the genus Oryza harbor a large amount of genetic diversity that has been untapped for rice improvement. Pan-genomics has revolutionized genomic research in plants. However, rice pan-genomic studies so far have been limited mostly
Chao Huang, Zhuo Chen, Chengzhi Liang
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Frontiers in Plant Science, 2021 Sorghum (Sorghum bicolor L.) is a staple food crops in the arid and rainfed production ecologies. Sorghum plays a critical role in resilient farming and is projected as a smart crop to overcome the food and nutritional insecurity in the developing world.
Pradeep Ruperao +13 more
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IPGA: A handy integrated prokaryotes genome and pan‐genome analysis web service
iMeta, 2022 Pan‐genomics is one of the most powerful means to study genomic variation and obtain a sketch of genes within a defined clade of species. Though there are a lot of computational tools to achieve this, an integrated framework to evaluate their performance
Dongmei Liu +9 more
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Nature Communications, 2023 Pan-genomes provide useful resources for evolutionary studies, functional genomics and breeding of cultivated plants. Here, the authors report a new rice pan-genome including 73 Asian rice and two wild relatives (Oryza rufipogon and O.
Yong Zhou +24 more
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