Results 11 to 20 of about 174,716 (299)

panX: pan-genome analysis and exploration [PDF]

Nucleic Acids Research, 2017
Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a complex mixture of different modes of evolution. Closely related strains can differ in the presence or absence of many genes, and the total number of distinct
Baumdicker, Franz, Ding, Wei, Neher, Richard A.   +2 more
core   +7 more sources

Pan-Genome miRNomics in Brachypodium [PDF]

Plants, 2021
Pan-genomes are efficient tools for the identification of conserved and varying genomic sequences within lineages of a species. Investigating genetic variations might lead to the discovery of genes present in a subset of lineages, which might contribute into beneficial agronomic traits such as stress resistance or yield.
Tugdem Muslu, Sezgi Biyiklioglu-Kaya, Bala Ani Akpinar, Meral Yuce, Hikmet Budak   +4 more
openaire   +4 more sources

First Steps in the Analysis of Prokaryotic Pan-Genomes

Bioinformatics and Biology Insights, 2020
Pan-genome is defined as the set of orthologous and unique genes of a specific group of organisms. The pan-genome is composed by the core genome, accessory genome, and species- or strain-specific genes.
Sávio Souza Costa, Luís Carlos Guimarães, Artur Silva, Siomar Castro Soares, Rafael Azevedo Baraúna   +4 more
doaj   +1 more source

The Salmonella enterica Pan-genome [PDF]

Microbial Ecology, 2011
Salmonella enterica is divided into four subspecies containing a large number of different serovars, several of which are important zoonotic pathogens and some show a high degree of host specificity or host preference. We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences).
Jacobsen, Annika, Hendriksen, Rene S., Aarestrup, Frank Møller, Ussery, David, Friis, Carsten   +4 more
openaire   +4 more sources

PGAP: pan-genomes analysis pipeline [PDF]

Bioinformatics, 2011
Abstract Summary: With the rapid development of DNA sequencing technology, increasing bacteria genome data enable the biologists to dig the evolutionary and genetic information of prokaryotic species from pan-genome sight. Therefore, the high-efficiency pipelines for pan-genome analysis are mostly needed.
Zhao, Yongbing, Wu, Jiayan, Yang, Junhui, Sun, Shixiang, Xiao, Jingfa, Yu, Jun   +5 more
openaire   +2 more sources

A pan-Zea genome map for enhancing maize improvement

Genome Biology, 2022
Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding challenges. However, both a super pan-genome for the Zea genus and a comprehensive genetic variation map for maize breeding are still lacking.
Songtao Gui, Wenjie Wei, Chenglin Jiang, Jingyun Luo, Lu Chen, Shenshen Wu, Wenqiang Li, Yuebin Wang, Shuyan Li, Ning Yang, Qing Li, Alisdair R. Fernie, Jianbing Yan   +12 more
doaj   +1 more source

Comparative pan-genome analysis of Piscirickettsia salmonis reveals genomic divergences within genogroups [PDF]

, 2017
Indexación: Scopus.Piscirickettsia salmonis is the etiological agent of salmonid rickettsial septicemia, a disease that seriously affects the salmonid industry. Despite efforts to genomically characterize P.
Cárcamo, J.G., Espinoza-Rojas, D.A., Figueroa, J.E., Mancilla, M., Maracaja-Coutinho, V., Molina, C.F., Nourdin-Galindo, G., Oliver, C., Ruiz, P., Sánchez, P., Vargas-Chacoff, L., Yañez, A.J.   +11 more
core   +2 more sources

Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets

Frontiers in Microbiology, 2018
Corallococcus is an abundant genus of predatory soil myxobacteria, containing two species, C. coralloides (for which a genome sequence is available) and C. exiguus.
Paul G. Livingstone, Russell M. Morphew, David E. Whitworth   +2 more
doaj   +1 more source

BPGA- an ultra-fast pan-genome analysis pipeline [PDF]

, 2016
Recent advances in ultra-high-throughput sequencing technology and metagenomics have led to a paradigm shift in microbial genomics from few genome comparisons to large-scale pan-genome studies at different scales of phylogenetic resolution.
A Jacobsen, A Mira, AJ Page, B Dunn, BA Read, C Delorme, C Donati, C Laing, D Maione, D Medini, D Serruto, DA Rasko, DE Fouts, G Vernikos, GC Kettler, H Tettelin, J Cao, J Xiao, JP McCutcheon, JS Hogg, KR Sakharkar, L Li, L Snipen, L Staali, M Eppinger, M Liu, M Ravenhall, MC Maiden, MJ Brittnacher, MN Benedict, MR Davies, NL Hiller, P Lapierre, RC Edgar, RC Edgar, S Aherfi, T Lefebure, T Smokvina, VK Gupta, W Li, Y Zhao, Y Zhao, YH Li   +42 more
core   +2 more sources

Graph-based pan-genome analysis reveals diversity of structural variations in native and commercial chicken [PDF]

Frontiers of Agricultural Science and Engineering
Chickens are one of the most important domesticated animals, serving as an important protein source. Studying genetic variations in chickens to enhance their production performance is of great potential value.
Yiming WANG, Zijia NI, Yinhua HUANG
doaj   +1 more source