Results 11 to 20 of about 1,691,339 (303)
Genomic characterization of Campylobacter jejuni strain M1. [PDF]
PLoS ONE, 2010 Campylobacter jejuni strain M1 (laboratory designation 99/308) is a rarely documented case of direct transmission of C. jejuni from chicken to a person, resulting in enteritis. We have sequenced the genome of C.
Carsten Friis +10 more
doaj +3 more sources
The pan-genome of Saccharomyces cerevisiae [PDF]
FEMS Yeast Research, 2019 Understanding genotype-phenotype relationship is fundamental in biology. With the benefit from next-generation sequencing and high-throughput phenotyping methodologies, there have been generated much genome and phenome data for Saccharomyces cerevisiae ...
Jens Nielsen +12 more
core +3 more sources
Dynamic construction of pan-genome subgraphs [PDF]
Open Computer Science, 2020 Marcus et al. (Bioinformatics 2014) proposed to use a compressed de Bruijn graph as a description of a pan-genome, comprising the genomes of many individuals/strains of the same or closely related species. Subsequent work improved the construction of the
Dede Kadir, Ohlebusch Enno
doaj +3 more sources
The Salmonella enterica Pan-genome [PDF]
Microbial Ecology, 2011 Salmonella enterica is divided into four subspecies containing a large number of different serovars, several of which are important zoonotic pathogens and some show a high degree of host specificity or host preference. We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences).
Jacobsen, Annika +4 more
openaire +4 more sources
, 2021 A chickpea pan-genome to describe genomic diversity across cultivated chickpea and its wild progenitor ...
Rajeev Varshney (10103350)
core +1 more source
Building a Pan-Genome Reference for a Population [PDF]
Journal of Computational Biology, 2015 Abstract A reference genome is a high quality individual genome that is used as a coordinate system for the genomes of a population, or genomes of closely related subspecies. Given a set of genomes partitioned by homology into alignment blocks we formalize the problem of ordering and orienting the blocks such that the resulting ...
Ngan Nguyen +8 more
openaire +5 more sources
, 2023 Outputs of pan-genome analyses performed by GET_HOMOLOGUES pipeline.
Nemanja Kuzmanovic (9883286)
core +1 more source
Plant pan-genomes are the new reference [PDF]
Nature Plants, 2020 Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.
Philipp E. Bayer +4 more
openaire +5 more sources
A pan-Zea genome map for enhancing maize improvement
Genome Biology, 2022 Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding challenges. However, both a super pan-genome for the Zea genus and a comprehensive genetic variation map for maize breeding are still lacking.
Songtao Gui +12 more
doaj +1 more source