Results 11 to 20 of about 176,950 (261)
Dynamic construction of pan-genome subgraphs [PDF]
Open Computer Science, 2020 Marcus et al. (Bioinformatics 2014) proposed to use a compressed de Bruijn graph as a description of a pan-genome, comprising the genomes of many individuals/strains of the same or closely related species. Subsequent work improved the construction of the
Dede Kadir, Ohlebusch Enno
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Pan-Genome miRNomics in Brachypodium [PDF]
Plants, 2021 Pan-genomes are efficient tools for the identification of conserved and varying genomic sequences within lineages of a species. Investigating genetic variations might lead to the discovery of genes present in a subset of lineages, which might contribute into beneficial agronomic traits such as stress resistance or yield.
Tugdem Muslu +4 more
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The Salmonella enterica Pan-genome [PDF]
Microbial Ecology, 2011 Salmonella enterica is divided into four subspecies containing a large number of different serovars, several of which are important zoonotic pathogens and some show a high degree of host specificity or host preference. We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences).
Jacobsen, Annika +4 more
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Building a Pan-Genome Reference for a Population [PDF]
Journal of Computational Biology, 2015 Abstract A reference genome is a high quality individual genome that is used as a coordinate system for the genomes of a population, or genomes of closely related subspecies. Given a set of genomes partitioned by homology into alignment blocks we formalize the problem of ordering and orienting the blocks such that the resulting ...
Ngan Nguyen +8 more
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Plant pan-genomes are the new reference [PDF]
Nature Plants, 2020 Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.
Philipp E. Bayer +4 more
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Unity in Variety--The Pan-Genome of the Chlamydiae [PDF]
Molecular Biology and Evolution, 2011 Chlamydiae are evolutionarily well-separated bacteria that live exclusively within eukaryotic host cells. They include important human pathogens such as Chlamydia trachomatis as well as symbionts of protozoa. As these bacteria are experimentally challenging and genetically intractable, our knowledge about them is still limited.
Collingro A +13 more
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Frontiers in Microbiology, 2018 Corallococcus is an abundant genus of predatory soil myxobacteria, containing two species, C. coralloides (for which a genome sequence is available) and C. exiguus.
Paul G. Livingstone +2 more
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A pan-Zea genome map for enhancing maize improvement
Genome Biology, 2022 Background Maize (Zea mays L.) is at the vanguard facing the upcoming breeding challenges. However, both a super pan-genome for the Zea genus and a comprehensive genetic variation map for maize breeding are still lacking.
Songtao Gui +12 more
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Graph-based pan-genome analysis reveals diversity of structural variations in native and commercial chicken [PDF]
Frontiers of Agricultural Science and EngineeringChickens are one of the most important domesticated animals, serving as an important protein source. Studying genetic variations in chickens to enhance their production performance is of great potential value.
Yiming WANG, Zijia NI, Yinhua HUANG
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PGAweb: A Web Server for Bacterial Pan-Genome Analysis
Frontiers in Microbiology, 2018 An astronomical increase in microbial genome data in recent years has led to strong demand for bioinformatic tools for pan-genome analysis within and across species.
Xinyu Chen +25 more
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