Results 1 to 10 of about 176,950 (261)
IPGA: A handy integrated prokaryotes genome and pan‐genome analysis web service
iMeta, 2022 Pan‐genomics is one of the most powerful means to study genomic variation and obtain a sketch of genes within a defined clade of species. Though there are a lot of computational tools to achieve this, an integrated framework to evaluate their performance
Dongmei Liu +9 more
doaj +2 more sources
First Steps in the Analysis of Prokaryotic Pan-Genomes
Bioinformatics and Biology Insights, 2020 Pan-genome is defined as the set of orthologous and unique genes of a specific group of organisms. The pan-genome is composed by the core genome, accessory genome, and species- or strain-specific genes.
Sávio Souza Costa +4 more
doaj +2 more sources
Comprehensive genomic and computational insights into Brucella suis: pan-genome analysis, evolutionary perspectives, and in-silico vaccine design [PDF]
BMC GenomicsBackground Brucella suis is a zoonotic intracellular pathogen responsible for brucellosis, mainly in swine and humans. Although numerous genome sequences are publicly available, an integrative genomic analysis combining pan-genome architecture ...
Ghulam Muhammad Sami Ullah Asif +13 more
doaj +2 more sources
Pan-Genome Analysis of Staphylococcus aureus Reveals Key Factors Influencing Genomic Plasticity
Microbiology Spectrum, 2022 The massive quantities of bacterial genomic data being generated have facilitated in-depth analyses of bacteria for pan-genomic studies. However, the pan-genome compositions of one species differed significantly between different studies, so we used ...
Na Liu +4 more
doaj +3 more sources
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks [PDF]
Nature CommunicationsPan-genome analysis is a crucial method for studying genomic dynamics. By creating pan-genome maps for prokaryotic organisms, we can gain valuable insights into their genetic diversity and ecological adaptability.
Congfan Bu +11 more
doaj +2 more sources
Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal, 2021 Advances in sequencing technology have led to the increased availability of genomes and metagenomes, which has greatly facilitated microbial pan-genome and metagenome analysis in the community.
Chaofang Zhong +3 more
doaj +1 more source
Oryza pan-genomics: A new foundation for future rice research and improvement
Crop Journal, 2021 The wild rice species in the genus Oryza harbor a large amount of genetic diversity that has been untapped for rice improvement. Pan-genomics has revolutionized genomic research in plants. However, rice pan-genomic studies so far have been limited mostly
Chao Huang, Zhuo Chen, Chengzhi Liang
doaj +1 more source
Frontiers in Plant Science, 2021 Sorghum (Sorghum bicolor L.) is a staple food crops in the arid and rainfed production ecologies. Sorghum plays a critical role in resilient farming and is projected as a smart crop to overcome the food and nutritional insecurity in the developing world.
Pradeep Ruperao +13 more
doaj +1 more source
Nature Communications, 2023 Pan-genomes provide useful resources for evolutionary studies, functional genomics and breeding of cultivated plants. Here, the authors report a new rice pan-genome including 73 Asian rice and two wild relatives (Oryza rufipogon and O.
Yong Zhou +24 more
doaj +1 more source
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs
Genome Biology, 2021 We present pandora, a novel pan-genome graph structure and algorithms for identifying variants across the full bacterial pan-genome. As much bacterial adaptability hinges on the accessory genome, methods which analyze SNPs in just the core genome have ...
Rachel M. Colquhoun +10 more
doaj +1 more source