Results 21 to 30 of about 1,691,339 (303)
Roary : rapid large-scale prokaryote pan genome analysis [PDF]
, 2015 This work was supported by the Wellcome Trust (grant WT 098051).A typical prokaryote population sequencing study can now consist of hundreds or thousands of isolates.
Page, Andrew J +9 more
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Unity in Variety--The Pan-Genome of the Chlamydiae [PDF]
Molecular Biology and Evolution, 2011 Chlamydiae are evolutionarily well-separated bacteria that live exclusively within eukaryotic host cells. They include important human pathogens such as Chlamydia trachomatis as well as symbionts of protozoa. As these bacteria are experimentally challenging and genetically intractable, our knowledge about them is still limited.
Collingro A +13 more
openaire +4 more sources
Frontiers in Microbiology, 2018 Corallococcus is an abundant genus of predatory soil myxobacteria, containing two species, C. coralloides (for which a genome sequence is available) and C. exiguus.
Paul G. Livingstone +2 more
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Graph-based pan-genome analysis reveals diversity of structural variations in native and commercial chicken [PDF]
Frontiers of Agricultural Science and EngineeringChickens are one of the most important domesticated animals, serving as an important protein source. Studying genetic variations in chickens to enhance their production performance is of great potential value.
Yiming WANG, Zijia NI, Yinhua HUANG
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Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark [PDF]
, 2020 High-throughput sequencing (HTS) technologies have enabled rapid sequencing of genomes and large-scale genome analytics with massive data sets. Traditionally, genetic variation analyses have been based on the human reference genome assembled from a ...
Mäkinen, Veli +9 more
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PGAweb: A Web Server for Bacterial Pan-Genome Analysis
Frontiers in Microbiology, 2018 An astronomical increase in microbial genome data in recent years has led to strong demand for bioinformatic tools for pan-genome analysis within and across species.
Xinyu Chen +25 more
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Pan-genome and core genome development projections for investigated nine Salmonella strains.
, 2021 Pan-genome and core genome development projections. (DOCX)
Taruna Anand (828898) +4 more
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Reference-agnostic representation and visualization of pan-genomes
BMC Bioinformatics, 2021 Background The pan-genome of a species is the union of the genes and non-coding sequences present in all individuals (cultivar, accessions, or strains) within that species.
Qihua Liang, Stefano Lonardi
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Pan-genome mapping thresholds.
, 2023 a) Determining the number of additional genes identified at each CV threshold. The dashed red line indicates the chosen threshold (≤ 1.5) for the analysis. b) Distribution of mean gene coverages for the mapping of the ancient B.
Valentina Giuffra (4735104) +13 more
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Frontiers in Microbiology, 2019 For more than a decade, pan-genome analysis has been applied as an effective method for explaining the genetic contents variation of prokaryotic species. However, genomic characteristics and detailed structures of gene pools have not been fully clarified,
Sang-Cheol Park +7 more
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