Results 71 to 80 of about 1,053,752 (301)

Vibrio choleraePhage K139: Complete Genome Sequence and Comparative Genomics of Related Phages [PDF]

Journal of Bacteriology, 2002
ABSTRACTIn this report, we characterize the complete genome sequence of the temperate phage K139, which morphologically belongs to theMyoviridaephage family (P2 and 186). The prophage genome consists of 33,106 bp, and the overall GC content is 48.9%. Forty-four open reading frames were identified.
Dagmar, Kapfhammer, Julia, Blass, Stefan, Evers, Joachim, Reidl   +3 more
openaire   +2 more sources

Genomic analysis, culturing optimization, and characterization of Escherichia bacteriophage OSYSP, previously studied as effective pathogen control on fresh produce

Frontiers in Microbiology
Advances in bacteriophage genome sequencing and regulatory approvals of some bacteriophages in various applications have renewed interest in these antibacterial viruses as a potential solution to persistent food safety challenges.
Mustafa Yesil, En Huang, En Huang, Xu Yang, Xu Yang, Ahmed E. Yousef, Ahmed E. Yousef   +6 more
doaj   +1 more source

The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination

Virology Journal, 2010
Background Bacteriophage classification is mainly based on morphological traits and genome characteristics combined with host information and in some cases on phage growth lifestyle.
Regeard Christophe, DuBow Michael S, Deschavanne Patrick   +2 more
doaj   +1 more source

Isolation and Characterization of a Newly Discovered Phage, V-YDF132, for Lysing Vibrio harveyi

Viruses, 2022
A newly discovered lytic bacteriophage, V-YDF132, which efficiently infects the pathogenic strain of Vibrio harveyi, was isolated from aquaculture water collected in Yangjiang, China.
Shaozhu Kang, Luhao Zhang, Jiaming Liao, Dongzhuo Zhang, Siting Wu, Xin Zhang, Qiwei Qin, Jingguang Wei   +7 more
doaj   +1 more source

Genome map of phage HY01.

, 2016
Genome map of phage HY01.
Dong-Hoon Lee (106435), Heyn Lee (3609098), Hye-Jin Ku (3539804), Sangryeol Ryu (12777), Ju-Hoon Lee (50046), You-Tae Kim (3539795), Hakdong Shin (140710)   +6 more
core   +1 more source

An outer membrane vesicle‐associated two‐track model for enterotoxigenic Bacteroides fragilis oncogenesis

Molecular Oncology, EarlyView.
Enterotoxigenic Bacteroides fragilis is a gut bacterium linked to bowel cancer. We propose that its toxin acts along two routes: at the cell surface, cutting the adhesion protein E‐cadherin and triggering inflammation; and inside the cell, delivered by bacterial vesicles, switching on NOD1 and cancer stem cell programs.
Kangchan Choi, Sang‐Hyeon Yoo, Ki‐Jong Rhee   +2 more
wiley   +1 more source

Complete Genome Sequence of EtG, the First Phage Sequenced from Erwinia tracheiphila

, 2018
Erwinia tracheiphila is the causal agent of bacterial wilt of cucurbits. Here, we report the genome sequence of the temperate phage EtG, which was isolated from an E. tracheiphila-infected cucumber plant.
Andrade-Domínguez, Andrés, Shapiro, Lori, Andrés Andrade-Domínguez, Kolter, Roberto, Roberto Kolter, Lori R. Shapiro   +5 more
core   +1 more source

Cluster J Mycobacteriophages: Intron Splicing in Capsid and Tail Genes [PDF]

, 2013
Bacteriophages isolated on Mycobacterium smegmatis mc2155 represent many distinct genomes sharing little or no DNA sequence similarity. The genomes are architecturally mosaic and are replete with genes of unknown function.
Susan Offner, Thibault, Sarah A, Deborah Jacobs-Sera, Aaron A Best, Best, AA, Welkin H Pope, Conway, JF, Daniel A. Russell (199599), Deborah Jacobs-Sera (199566), Emily L. Stowe (431712), Stukey, Joseph, Rebekah M Dedrick, Broussard, GW, Russell, Daniel A, Offner, Susan, Marie C Pizzorno, Emily L Stowe, Pamela L. Connerly (431705), Marie C. Pizzorno (431710), Kremer, Timothy A, Conway, James F, Aaron A. Best (231720), Graham F Hatfull, Gregory W. Broussard (431704), Jacobs-Sera, Deborah, Graham F. Hatfull (174881), Connerly, PL, Kremer, TA, Connerly, Pamela L, Welkin H. Pope (199562), Hatfull, GF, Stowe, EL, Pope, Welkin H, Hendrix, Roger W, Stowe, Emily L, Best, Aaron A, Sarah A. Thibault (431713), Rebekah M. Dedrick (431706), Sarah A Thibault, James F Conway, Rockenbach, Kate, Gregory W Broussard, James F. Conway (393058), Jacobs-Sera, D, Hatfull, Graham F., Joseph Stukey, Dedrick, Rebekah M, Pamela L Connerly, Roger W Hendrix, Joseph Stukey (232098), Ogiefo, AH, Amenawon H. Ogiefo (431709), Kate Rockenbach, Susan Offner (431708), Ogiefo, Amenawon H, Daniel A Russell, Dedrick, RM, Stukey, J, Timothy A Kremer, Rockenbach, K, Amenawon H Ogiefo, Kate Rockenbach (431711), Pizzorno, Marie, Hendrix, RW, Pope, WH, Russell, DA, Broussard, Gregory W, Roger W. Hendrix (199647), Rochenbach, Kate, Pizzorno, Marie C, Offner, S, Thibault, SA, Timothy A. Kremer (431707), Pizzorno, MC, Hatfull, Graham F   +74 more
core   +2 more sources

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Directed evolution of enzymes at the crossroads of tradition and innovation

FEBS Open Bio, EarlyView.
An iterative cycle of data‐driven enzyme optimization comprising four stages: genetic diversification of a template enzyme, expression of protein variants, high‐throughput evaluation, and machine‐learning‐guided redesign of the next variant library.
Maria Tomkova, Andrej Mirossay, Erik Sedlak   +2 more
wiley   +1 more source