Results 101 to 110 of about 2,036 (163)

Viruses Previously Classified as CRF146_BC, a Circulating Recombinant Form of HIV-1 Recently Reported in Brazil, Represent Different Recombinant Forms, One of Which Is Circulating in Spain

Viruses
Circulating recombinant forms (CRFs) are important components of the HIV-1 pandemic. Previous studies have reported the propagation of diverse HIV-1 CRFs of South American origin in Europe.
Ana Donoso, María Moreno-Lorenzo, Elena Delgado, Javier E. Cañada-García, José Antonio Iribarren, Yolanda Salicio, Sonia Benito, Clara Lorente-Sorolla, Jorge Del Romero-Guerrero, María Begoña Baza-Caraciolo, Francisco Díez-Fuertes, Pilar Zamarrón, Raquel Téllez, Ana Miqueleiz, Carmen Gómez-González, Sandra Cortizo, Luis Morano, Michael M. Thomson   +17 more
doaj   +1 more source

Phylodynamic reconstruction of H1N1pdm09 influenza virus transmission in Brazil: a decade of evolutionary dynamics

Emerging Microbes and Infections
The H1N1pdm09 influenza virus, which emerged in 2009 following a unique reassortment of swine-origin gene segments, rapidly replaced the seasonal H1N1 strain and triggered the first influenza pandemic of the twenty-first century.
Isabela Carvalho Brcko, Vinicius Carius de Souza, Alex Ranieri Jeronimo Lima, James Siqueira Pereira, Evaldo Stanislau Affonso de Araújo, Ana Paula Nunes Viveiros Valeiros, Melissa Palmieri, Juliana Almeida Nunes, Leandro Spalato Torres, Hazerral de Oliveira Santos, Anderson Brandão Leite, Felicidade Mota Pereira, Arabela Leal e Silva de Mello, Vanessa Brandão Nardy, Gabriela Sant'Ana Menezes de Andrade, Marcela Kelly Astete Gomez, Lucas Luiz Vieira, Mariana Matos Roll, Brenno Vinícius Martins Henrique, Lídio Gonçalves Lima Neto, Elaine Cristina de Oliveira, Júlia Deffune Profeta Cidin Almeida, Stephanni Figueiredo da Silva, Klaucia Rodrigues Vasconcelos, Talita Emile Ribeiro Adelino, Natalia Rocha Guimaraes, Luiz Marcelo Ribeiro Tomé, Lavinia Nery Villa Stangler Arend, Ciciléia Correia da Silva, Adriana Cristina Salvador Maia, Cristiane Batista Mattos, Glaucilene da Silva Costa, Luiz Carlos Alcântara, Esper G. Kallás, Sandra Coccuzzo Sampaio, Svetoslav Nanev Slavov, Marta Giovanetti, Maria Carolina Elias   +37 more
doaj   +1 more source

Statistical approaches to viral phylodynamics

, 2019
The recent years have witnessed a rapid increase in the quantity and quality of genomic data collected from human and animal pathogens, viruses in particular. When coupled with mathematical and statistical models, these data allow us to combine evolutionary theory and epidemiology to understand pathogen dynamics.
openaire   +1 more source

Navigating the mysterious space of evolutionary histories. [PDF]

Proc Natl Acad Sci U S A
Drummond AJ, Popinga A.
europepmc   +1 more source

Fast hospital discharge rates blur within-hospital 'transmission footprint' in bacterial genomes, as showcased with Staphylococcus aureus. [PDF]

PLoS Comput Biol
Översti S, Boumasmoud M, Günthard HF, Sax H, Zinkernagel AS, Kouyos RD, Kühnert D.   +6 more
europepmc   +1 more source

Decoding Genomes: From Sequences to Phylodynamics

ISBN:978-3-907363-52 ...
Stadler, Tanja, Magnus, Carsten, Vaughan, Timothy G., Barido-Sottani, Joëlle, Bošková, Veronika, Huisman, Jana, Pečerska, Jūlija   +6 more
openaire   +3 more sources

Biological causes and impacts of rugged tree landscapes in phylodynamic inference. [PDF]

Proc Natl Acad Sci U S A
Gao J, Brusselmans M, Carvalho LM, Suchard MA, Baele G, Matsen FA.   +5 more
europepmc   +1 more source

Main determinants of human influenza phylodynamics

, 2010
As stated in [1], three main mechanisms have been proposed to explain the particular phylodynamic patterns observed in human influenza viruses: - a short-lived full cross-immunity among viral strains [2], - a punctuated evolution of the hemagglutinin (HA) gene among antigenic types that are linked by a network of neutrally evolving sites [3] - a ...
Ballesteros, Sébastien, Camacho, A., Vergu, Elisabeta, Cazelles, Bernard   +3 more
openaire   +2 more sources

Emergence and epidemiology of dominant variants of human metapneumovirus in the United States between 2016 and 2021. [PDF]

mBio
Pless LL, Damodaran L, Pomponio R, Patrick R, Griffith MP, Walters S, Waggle KD, Pleskovitch A, Rangachar Srinivasa V, Varela CA, Harrison LH, Barton JP, Moncla LH, Michaels MG, Williams JV, Wang-Erickson AF.   +15 more
europepmc   +1 more source

Multi-scale phylodynamic modelling of rapid punctuated pathogen evolution. [PDF]

PLoS Comput Biol
Nguyen QD, Chang SL, Suster CJE, Rockett RJ, Sintchenko V, Sorrell TC, Prokopenko M.   +6 more
europepmc   +1 more source