Results 81 to 90 of about 2,682 (195)

Origin and Phylodynamics of Rabbit Hemorrhagic Disease Virus [PDF]

Journal of Virology, 2009
ABSTRACT To determine the origin, phylogenetic relationships, and evolutionary dynamics of rabbit hemorrhagic disease virus (RHDV), we examined 210 partial and complete capsid gene nucleotide sequences. Using a Bayesian Markov chain Monte Carlo approach, we estimated that these sequences evolved at a rate of 3.9 × 10 −
Peter J, Kerr, Andrew, Kitchen, Edward C, Holmes   +2 more
openaire   +2 more sources

Concept diagram showing an example of how the physical samples and associated data available through non-model biorepositories can fuel diverse aspects of host–pathogen modeling, immunology, and phylodynamics, among other applications relevant to public health.

, 2023
Concept diagram showing an example of how the physical samples and associated data available through non-model biorepositories can fuel diverse aspects of host–pathogen modeling, immunology, and phylodynamics, among other applications relevant to public ...
Jocelyn P. Colella (10917970), Marlon E. Cobos, Joseph A. Cook, Irene Salinas (39090), Jocelyn P. Colella, Marlon E. Cobos (6169847), Joseph A. Cook (9187861), Irene Salinas   +7 more
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Molecular Basis of the Toxigenic Vibrio cholerae O1 Serotype Switch from Ogawa to Inaba in Haiti

Microbiology Spectrum, 2023
Toxigenic Vibrio cholerae O1 serotype Ogawa was introduced involuntarily into Haiti in October 2010, and virtually all of the clinical strains isolated during the first 5 years of the epidemic were Ogawa.
Taylor K. Paisie, Melanie N. Cash, Massimiliano S. Tagliamonte, Afsar Ali, J. Glenn Morris, Marco Salemi, Carla Mavian   +6 more
doaj   +1 more source

phylodyn: an R package for phylodynamic simulation and inference [PDF]

Molecular Ecology Resources, 2016
AbstractWe introduce phylodyn, an r package for phylodynamic analysis based on gene genealogies. The package's main functionality is Bayesian nonparametric estimation of effective population size fluctuations over time. Our implementation includes several Markov chain Monte Carlo‐based methods and an integrated nested Laplace approximation‐based ...
Karcher, Michael D, Palacios, Julia A, Lan, Shiwei, Minin, Vladimir N   +3 more
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Origin, tempo, and mode of the spread of DENV-4 Genotype IIB across the state of São Paulo, Brazil during the 2012-2013 outbreak

Memorias do Instituto Oswaldo Cruz, 2019
BACKGROUND Dengue virus type 4 (DENV-4) was first reported in Brazil in 1982 and since then no more cases were detected again in Brazil until 2010, when the virus was reintroduced.
Ayda Susana Ortiz-Baez, Marielton dos Passos Cunha, Danila Vedovello, Tatiana Elias Colombo, Maurício Lacerda Nogueira, Christian Julián Villabona-Arenas, Paolo Marinho de Andrade Zanotto   +6 more
doaj   +1 more source

ReMASTER: improved phylodynamic simulation for BEAST 2.7

Bioinformatics, 2023
Abstract Summary Phylodynamic models link phylogenetic trees to biologically-relevant parameters such as speciation and extinction rates (macroevolution), effective population sizes and migration rates (ecology and phylogeography), and transmission and removal/recovery rates (epidemiology) to ...
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Data from: The contrasting phylodynamics of human influenza B viruses

, 2015
A complex interplay of viral, host and ecological factors shape the spatio-temporal incidence and evolution of human influenza viruses. Although considerable attention has been paid to influenza A viruses, a lack of equivalent data means that an ...
Zhou, Bin, Lee, Raphael T. C., Stadler, Tanja, Bošková, Veronika, Spirason, Natalie, Deng, Yi-Mo, Wentworth, David, Huang, Q. Sue, Lee, Raphael TC, Costa, Anna-Maria, Halpin, Rebecca, Smith, Gavin JD, Maurer-Stroh, Sebastian, Rawlinson, William, Gunalan, Vithiagaran, Hurt, Aeron C., Kühnert, Denise K., Vijaykrishna, Dhanasekaran, Jennings, Lance C., Fedorova, Nadia B., Holmes, Edward C., Dwyer, Dominic E., Sullivan, Sheena G., Joseph, Udayan, Fourment, Mathieu, Su, Yvonne C. F., Lin, Xudong, Smith, Gavin J. D., Barr, Ian G., Stockwell, Tim   +29 more
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The phylodynamics of hepatitis C virus in a clinical and public health context [PDF]

, 2018
Hepatitis C virus (HCV) is a blood-borne RNA virus that infects the liver of its human host. Worldwide an estimated 80 million people suffer from viraemic HCV infections resulting in more than half a million deaths annually.
Ho, K.Y.C.
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Earlier Initiation of Antiretroviral Treatment Coincides With an Initial Control of the HIV-1 Sub-Subtype F1 Outbreak Among Men-Having-Sex-With-Men in Flanders, Belgium

Frontiers in Microbiology, 2019
Human immunodeficiency virus type 1 (HIV-1) non-B subtype infections occurred in Belgium since the 1980s, mainly amongst migrants and heterosexuals, whereas subtype B predominated in men-having-sex-with-men (MSM).
Lore Vinken, Katrien Fransen, Lize Cuypers, Ivailo Alexiev, Claudia Balotta, Laurent Debaisieux, Carole Seguin-Devaux, Sergio García Ribas, Perpétua Gomes, Perpétua Gomes, Francesca Incardona, Rolf Kaiser, Jean Ruelle, Murat Sayan, Murat Sayan, Simona Paraschiv, Roger Paredes, Martine Peeters, Anders Sönnerborg, Ellen Vancutsem, Anne-Mieke Vandamme, Anne-Mieke Vandamme, Sigi Van den Wijngaert, Marc Van Ranst, Marc Van Ranst, Chris Verhofstede, Tanja Stadler, Tanja Stadler, Philippe Lemey, Kristel Van Laethem, Kristel Van Laethem   +30 more
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Phylodynamics of parapoxvirus genus in Mexico (2007–2011)

, 2018
© 2018 In this study we report for the first time the phylodynamics of the parapoxvirus (PPV) genus in Mexico. Based on the analysis by PCR of 124 epithelial samples collected between 2007 and 2011 from naturally infected goats, sheep and cows in Mexico,
Gladue, DP, Velazquez-Salinas, L, Carrillo, C, Bracht, AJ, Ramirez-Medina, E, Hole, K, Brito, BP   +6 more
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