Results 81 to 90 of about 2,963 (216)

What happened after the epidemic? Equine influenza surveillance sheds light on sources and seasonal risk in the United Kingdom

open access: yesEquine Veterinary Journal, Volume 58, Issue 5, Page 1269-1282, September 2026.
Abstract Background The epidemiology of equine influenza (EI) in the United Kingdom has not been systematically described since the 2019 epidemic. Objectives To summarise UK EI surveillance (2020–2024), quantify outbreak seasonality and assess movement‐related sources. Study Design Retrospective observational analysis of national surveillance and horse
Fleur Whitlock   +2 more
wiley   +1 more source

Bayesian phylodynamic inference with complex models

open access: yesPLOS Computational Biology, 2018
Abstract Population genetic modeling can enhance Bayesian phylogenetic inference by providing a realistic prior on the distribution of branch lengths and times of common ancestry.The parameters of a population genetic model may also have intrinsic importance, and simultaneous estimation of a phylogeny and model ...
Erik M. Volz, Igor Siveroni
openaire   +5 more sources

Origin and Phylodynamics of Rabbit Hemorrhagic Disease Virus [PDF]

open access: yesJournal of Virology, 2009
ABSTRACT To determine the origin, phylogenetic relationships, and evolutionary dynamics of rabbit hemorrhagic disease virus (RHDV), we examined 210 partial and complete capsid gene nucleotide sequences. Using a Bayesian Markov chain Monte Carlo approach, we estimated that these sequences evolved at a rate of 3.9 × 10 −
Peter J, Kerr   +2 more
openaire   +2 more sources

Phylodynamics of HIV in the Mexico City Metropolitan Region

open access: yesJournal of Virology, 2022
Phylogeographic investigation of the Mexico City HIV epidemic illustrates the complexity of HIV transmission in the region. An active transmission area involving a few municipalities in the north of the city, with transmission links throughout the region, is identified and could be a location where targeted interventions could have a more pronounced ...
Santiago Avila-Rios   +6 more
openaire   +4 more sources

Main determinants of human influenza phylodynamics

open access: yes, 2010
As stated in [1], three main mechanisms have been proposed to explain the particular phylodynamic patterns observed in human influenza viruses: - a short-lived full cross-immunity among viral strains [2], - a punctuated evolution of the hemagglutinin (HA)
Vergu, Elisabeta   +5 more
core   +1 more source

Genomic epidemiology sheds light on the emergence and spread of Mycobacterium bovis Eu2 Clonal Complex in Portugal

open access: yesEmerging Microbes and Infections, 2023
Animal tuberculosis (TB) remains a serious concern for animal and human health. Mycobacterium bovis circulates in multi-host systems, dominated by the European 2 clonal complex (Eu2) in Iberia.
André C. Pereira   +2 more
doaj   +1 more source

Genomic Epidemiology and Clinical Characteristics of Mpox Lineage C.1 Outbreak in Thailand, 2023–2024

open access: yesJournal of Medical Virology, Volume 98, Issue 9, September 2026.
ABSTRACT Since 2022, human monkeypox virus (hMPXV) has emerged in non‐endemic regions, including Thailand. However, the genomic dynamics and clinical correlates of local transmission remain incompletely defined. Whole‐genome sequencing was performed on hMPXV from 16 patients in Thailand (2023–2024) using targeted amplicon NGS.
Kamol Suwannakarn   +12 more
wiley   +1 more source

Viral phylodynamics of host adaptation and antigenic evolution [PDF]

open access: yes, 2018
Thesis (Ph.D.)--University of Washington, 2018RNA viruses evolve quickly, on a comparable timescale to viral spread. Thus, each sampled case of an outbreak often carries a unique viral genomic signature.
Bell, Sidney
core  

Phylodynamics of the HIV-1 Epidemic in Cuba

open access: yesPLoS ONE, 2013
Previous studies have shown that the HIV-1 epidemic in Cuba displayed a complex molecular epidemiologic profile with circulation of several subtypes and circulating recombinant forms (CRF); but the evolutionary and population history of those viral variants remains unknown.
Edson Delatorre, Gonzalo Bello
openaire   +4 more sources

The Changing Landscape of Hantavirus Infections: A Narrative Review of Epidemiology, Pathogenesis, and Countermeasures

open access: yesReviews in Medical Virology, Volume 36, Issue 5, September 2026.
ABSTRACT Hantaviruses are emerging zoonotic pathogens of increasing global public health significance. Their epidemiological landscape is rapidly changing due to ecological disruption, climate variability, urbanisation, and evolving human–animal interfaces.
Francesco De Maria   +5 more
wiley   +1 more source

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