Results 101 to 110 of about 2,107 (180)

South Asian origin and global transmission history of Mycobacterium tuberculosis lineage 4

mSystems
The origin and transmission history of Mycobacterium tuberculosis lineage 4 (MTB L4) has been extensively studied. However, different studies yielded different results; thus, the evolutionary history of MTB L4 still remains a subject of debate. Recently,
Bharkbhoom Jaemsai, Prasit Palittapongarnpim, Pakorn Aiewsakun   +2 more
doaj   +1 more source

Bayesian phylodynamic inference of population dynamics with dormancy

Proceedings of the National Academy of Sciences
ABSTRACT Many organisms employ reversible dormancy, or seedbank , in response to environmental fluctuations. This life-history strategy alters fundamental eco-evolutionary forces, leading to distinct patterns of genetic diversity.
Lorenzo Cappello, Wai Tung ‘Jack’ Lo, Joy Z. Zhang, Peiyu Xu, Daniel Barrow, Ishani Chopra, Andrew G. Clark, Martin T. Wells, Jaehee Kim   +8 more
openaire   +4 more sources

Lineage Diversification and Evolutionary Dynamics of the Hemagglutinin–Neuraminidase Gene in Mumps Virus Genotype G

Microorganisms
Mumps virus (MuV) genotype G is widely represented among circulating strains, but the evolutionary patterns of the hemagglutinin–neuraminidase (HN) gene remain incompletely understood.
Fuminori Mizukoshi, Miu Takada, Ryusuke Kimura, Wei Liu, Yasuyoshi Hatayama, Mayuko Nishi, Yuka Sato-Fujimoto, Akira Kimura, Fumihiro Kato, Kei Miyakawa, Hirokazu Kimura, Akihide Ryo   +11 more
doaj   +1 more source

PhyloCNN: Improving Tree Representation and Neural Network Architecture for Deep Learning from Trees in Phylodynamics and Diversification Studies. [PDF]

Syst Biol
Perez MF, Gascuel O.
europepmc   +1 more source

Viral introductions and return to baseline sexual behaviors maintain low-level mpox incidence in Los Angeles. [PDF]

Nat Commun
Paredes MI, Liang C, Suen SC, Holloway IW, Garrigues JM, Green NM, Bedford T, Müller NF, Osmundson J.   +8 more
europepmc   +1 more source

treestructure: an R package to detect population structure in phylogenetic trees. [PDF]

Bioinformatics
Nascimento FF, Franceschi VB, Volz EM.
europepmc   +1 more source

Navigating the mysterious space of evolutionary histories. [PDF]

Proc Natl Acad Sci U S A
Drummond AJ, Popinga A.
europepmc   +1 more source

Fast hospital discharge rates blur within-hospital 'transmission footprint' in bacterial genomes, as showcased with Staphylococcus aureus. [PDF]

PLoS Comput Biol
Översti S, Boumasmoud M, Günthard HF, Sax H, Zinkernagel AS, Kouyos RD, Kühnert D.   +6 more
europepmc   +1 more source

Biological causes and impacts of rugged tree landscapes in phylodynamic inference. [PDF]

Proc Natl Acad Sci U S A
Gao J, Brusselmans M, Carvalho LM, Suchard MA, Baele G, Matsen FA.   +5 more
europepmc   +1 more source

Age-dependent Phylodynamics with Application to Single-cell Lineage Trees. [PDF]

Mol Biol Evol
Mulberry N, Pilarski J, Dinger J, Stadler T.   +3 more
europepmc   +1 more source