Results 61 to 70 of about 2,963 (216)

Use of Whole-Genome Sequencing to Unravel the Genetic Diversity of a Prevalent Mycobacterium bovis Spoligotype in a Multi-Host Scenario in Spain

open access: yesFrontiers in Microbiology, 2022
Despite the efforts invested in the eradication of bovine tuberculosis in Spain, herd prevalence has remained constant in the country during the last 15 years (~1.5–1.9%) due to a combination of epidemiological factors impairing disease control ...
Pilar Pozo   +15 more
doaj   +1 more source

A69 Phylodynamics of language evolution [PDF]

open access: yesVirus Evolution, 2019
Abstract We used Bayesian evolutionary analysis to study linguistic data and infer phylogenetic trees of language evolution. Languages were encoded as binary strings indicating the presence or absence of members of cognate classes, the equivalence of classes of words with similar meaning, and shared ancestry.
Hoffmann, K, Kühnert, D
openaire   +1 more source

Phylodynamics of deer tick virus in North America

open access: yesVirus Evolution, 2023
AbstractThe burden of ticks and the pathogens they carry is increasing worldwide. Powassan virus (POWV; Flaviviridae: Flavivirus), the only known North American tick-borne flavivirus, is of particular concern due to rising cases and the severe morbidity of POWV encephalitis.
Rebekah J McMinn   +16 more
openaire   +2 more sources

Dissemination Dynamics of HIV-1 Subtype B Pandemic and Non-pandemic Lineages Circulating in Amazonas, Brazil

open access: yesFrontiers in Microbiology, 2022
The HIV-1 epidemic in the Amazonas state, as in most of Brazil, is dominated by subtype B. The state, nonetheless, is singular for its significant co-circulation of the variants BCAR, which can mostly be found in the Caribbean region, and BPAN, a clade ...
Ighor Arantes   +5 more
doaj   +1 more source

Phylodynamics of the Brazilian feline immunodeficiency virus

open access: yesInfection, Genetics and Evolution, 2017
Feline immunodeficiency virus (FIV), like other retroviruses, displays large genomic divergence when different isolates are compared. In this study, 31 FIV positive samples of domestic cats from Porto Alegre, RS, Brazil were used aiming at a detailed genomic characterization and a better understanding of the molecular epidemiology of the virus in ...
Lucía Cano-Ortiz   +10 more
openaire   +2 more sources

Phylodynamic approaches to studying avian influenza virus

open access: yesAvian Pathology, 2023
Avian influenza viruses can cause severe disease in domestic and wild birds and are a pandemic threat. Phylodynamics is the study of how epidemiological, evolutionary, and immunological processes can interact to shape viral phylogenies. This review summarizes how phylodynamic methods have and could contribute to the study of avian influenza viruses ...
Carnegie, L.   +3 more
openaire   +4 more sources

A systematic review of avian influenza virus transmission models: Gaps and opportunities

open access: yesMethods in Ecology and Evolution, EarlyView.
Abstract Highly pathogenic avian influenza virus (HPAIV) increasingly threatens wild birds, poultry, non‐human mammals and humans, yet gaps and opportunities in avian influenza virus (AIV) transmission modelling have not been comprehensively synthesized.
Shenglai Yin   +7 more
wiley   +1 more source

Charting the Voyages of Acinetobacter baumannii in Southeast Asia: Mapping the Regional Genomic Landscape

open access: yesMicrobiologyOpen, Volume 15, Issue 6, December 2026.
A genomic analysis of 853 Southeast Asian Acinetobacter baumannii isolates reveals the regional dominance of the highly resistant Global Clone 2 (GC2) lineage. Characterised by diverse mobile elements and distinct phage defenses, these findings establish a critical baseline to guide future surveillance and broader regional sampling.
Soo Sum Lean   +3 more
wiley   +1 more source

The phylodynamics of the rabies virus in the Russian Federation

open access: yesPLOS ONE, 2017
Near complete rabies virus N gene sequences (1,110 nt) were determined for 82 isolates obtained from different regions of Russia between 2008 and 2016. These sequences were analyzed together with 108 representative GenBank sequences from 1977-2016 using the Bayesian coalescent approach. The timing of the major evolutionary events was estimated. Most of
Andrei A. Deviatkin   +9 more
openaire   +5 more sources

Comprehensive phylogeographic and phylodynamic analyses of global Senecavirus A

open access: yesFrontiers in Microbiology, 2022
Senecavirus A (SVA) is a member of the genus Senecavirus in the family Picornaviridae that infects pigs and shows symptoms similar to foot and mouth diseases and other vesicular diseases. It is difficult to prevent, thus, causing tremendous economic loss to the pig industry.
Han Gao   +33 more
openaire   +3 more sources

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