Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. [PDF]
Nucleic Acids Res, 2021 The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone.
Letunic I, Bork P.
europepmc +3 more sources
Robust Analysis of Phylogenetic Tree Space. [PDF]
Syst Biol, 2022 Phylogenetic analyses often produce large numbers of trees. Mapping trees’ distribution in “tree space” can illuminate the behavior and performance of search strategies, reveal distinct clusters of optimal trees, and expose differences between different ...
Smith MR.
europepmc +2 more sources
On the number of vertices of each rank in phylogenetic trees and their generalizations [PDF]
Discrete Mathematics & Theoretical Computer Science, 2016 We find surprisingly simple formulas for the limiting probability that the rank of a randomly selected vertex in a randomly selected phylogenetic tree or generalized phylogenetic tree is a given integer.
Miklós Bóna
doaj +3 more sources
Common Methods for Phylogenetic Tree Construction and Their Implementation in R. [PDF]
Bioengineering (Basel)A phylogenetic tree can reflect the evolutionary relationships between species or gene families, and they play a critical role in modern biological research.
Zou Y +6 more
europepmc +2 more sources
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool. [PDF]
Nucleic Acids ResThe Interactive Tree Of Life (https://itol.embl.de) is an online tool for the management, display, annotation and manipulation of phylogenetic and other trees. It is freely available and open to everyone.
Letunic I, Bork P.
europepmc +2 more sources
Harnessing machine learning to guide phylogenetic-tree search algorithms. [PDF]
Nat Commun, 2021 Inferring a phylogenetic tree is a fundamental challenge in evolutionary studies. Current paradigms for phylogenetic tree reconstruction rely on performing costly likelihood optimizations.
Azouri D +4 more
europepmc +2 more sources
Phylogenetic mixtures on a single tree can mimic a tree of another topology [PDF]
, 2007 Phylogenetic mixtures model the inhomogeneous molecular evolution commonly observed in data. The performance of phylogenetic reconstruction methods where the underlying data is generated by a mixture model has stimulated considerable recent debate.
Matsen, Frederick A., Steel, Mike
core +5 more sources
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Nucleic Acids Research, 2019 The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone.
Ivica Letunic, Peer Bork
exaly +2 more sources
Data on the solution and processing time reached when constructing a phylogenetic tree using a quantum-inspired computer [PDF]
Data in Brief, 2023 Phylogenetic trees provide insight into the evolutionary trajectories of species and molecules. However, because (2n-5)! Phylogenetic trees can be constructed from a dataset containing n sequences, but this method of phylogenetic tree construction is not
Wataru Onodera +4 more
doaj +2 more sources
eLifeEnvironmental factors can influence ecological networks, but these effects are poorly understood in the realm of the phylogeny of host-parasitoid interactions.
Ming-Qiang Wang +22 more
doaj +2 more sources