Results 11 to 20 of about 2,090,215 (317)

Embedding phylogenetic trees in networks of low treewidth [PDF]

open access: yesDiscrete Mathematics & Theoretical Computer Science, 2023
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic inference methods ...
Leo van Iersel   +2 more
doaj   +1 more source

Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees

open access: yesNucleic Acids Res., 2023
tvBOT is a user-friendly and efficient web application for visualizing, modifying, and annotating phylogenetic trees. It is highly efficient in data preparation without requiring redundant style and syntax data.
Jianmin Xie   +5 more
semanticscholar   +1 more source

Edge-related loss of tree phylogenetic diversity in the severely fragmented Brazilian Atlantic forest. [PDF]

open access: yesPLoS ONE, 2010
Deforestation and forest fragmentation are known major causes of nonrandom extinction, but there is no information about their impact on the phylogenetic diversity of the remaining species assemblages.
Bráulio A Santos   +3 more
doaj   +1 more source

Implementation of Phylogenetic Worksheet to Improve Students’ Tree Thinking and Critical Thinking Skills on Spermatophyte Classification

open access: yesLectura: Jurnal Pendidikan, 2023
Recent research shows that students’ ability to read and create phylogenetic trees (tree thinking) is low, meanwhile phylogenetic analysis has become one of the demands on the 2016 version of the 2013 curriculum.
Sofi Rahmania   +2 more
doaj   +1 more source

Community phylogeny and spatial scale affect phylogenetic diversity metrics in a species‐rich rainforest in Borneo

open access: yesEcology and Evolution, 2022
Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to ...
Seiya Okuno   +9 more
doaj   +1 more source

Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data

open access: yesiMeta, 2022
While phylogenetic trees and associated data have been getting easier to generate, it has been difficult to reuse, combine, and synthesize the information they provided, because published trees are often only available as image files and associated data ...
Shuangbin Xu   +9 more
semanticscholar   +1 more source

Scalable and Fast Algorithm for Constructing Phylogenetic Trees With Application to IoT Malware Clustering

open access: yesIEEE Access, 2023
With the development of IoT devices, there is a rapid increase in new types of IoT malware and variants, causing social problems. The malware’s phylogenetic tree has been used in many studies for malware clustering or better understanding of ...
Tianxiang He   +5 more
doaj   +1 more source

Fungal screening and phylogenetic tree construction [PDF]

open access: yesE3S Web of Conferences, 2020
The second-generation sequencing technology has achieved rapid development in recent years. It has the advantages of fast speed, high accuracy and low cost compared to the former sequence, so it has a widely application.
Zhou Jianyang
doaj   +1 more source

Phylogenetic Networks Do not Need to Be Complex: Using Fewer Reticulations to Represent Conflicting Clusters [PDF]

open access: yes, 2009
Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species that evolved from a common ancestor.
Bordewich   +25 more
core   +9 more sources

Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution [PDF]

open access: yesPeerJ, 2019
Barnacles and their allies (Thecostraca) are a biologically diverse, monophyletic crustacean group, which includes both intensely studied taxa, such as the acorn and stalked barnacles, as well as cryptic taxa, for example, Facetotecta.
Christine Ewers-Saucedo   +6 more
doaj   +2 more sources

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