Results 1 to 10 of about 300,530 (260)
U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals [PDF]
Plant Diversity, 2023 The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies.
Yi Jin, Hong Qian
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Visualizing incompatibilities in phylogenetic trees using consensus outlines [PDF]
Frontiers in Bioinformatics, 2023 Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis.
Daniel H. Huson +3 more
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The agreement distance of unrooted phylogenetic networks [PDF]
Discrete Mathematics & Theoretical Computer Science, 2020 A rearrangement operation makes a small graph-theoretical change to a phylogenetic network to transform it into another one. For unrooted phylogenetic trees and networks, popular rearrangement operations are tree bisection and reconnection (TBR) and ...
Jonathan Klawitter
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jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. [PDF]
PLoS ONE, 2010 Many software packages have been developed to address the need for generating phylogenetic trees intended for print. With an increased use of the web to disseminate scientific literature, there is a need for phylogenetic trees to be viewable across many ...
Samuel A Smits, Cleber C Ouverney
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Phylogenetic Networks Do not Need to Be Complex: Using Fewer Reticulations to Represent Conflicting Clusters [PDF]
, 2009 Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species that evolved from a common ancestor.
Bordewich +25 more
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Imputing Phylogenetic Trees Using Tropical Polytopes over the Space of Phylogenetic Trees
Mathematics, 2023 When we apply comparative phylogenetic analyses to genome data, it poses a significant problem and challenge that some of the given species (or taxa) often have missing genes (i.e., data).
Ruriko Yoshida
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Computing RF Tree Distance over Succinct Representations
Algorithms, 2023 There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks or cancerous cells in tumor progression trees.
António Pedro Branco +2 more
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Phylogenetic trees: Grammar versus vocabulary
Russian Journal of Linguistics, 2022 Traditionally, genealogical relationships between languages are established on the basis of phonetic and lexical data. The question whether genealogical relationships among languages can be defined based on grammatical data remains unanswered.
Vladimir N. Polyakov +2 more
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Ecology and Evolution, 2022 Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to ...
Seiya Okuno +9 more
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ENJ algorithm can construct triple phylogenetic trees
Molecular Therapy: Nucleic Acids, 2021 Phylogenetic analysis is used to analyze the evolution of species according to the characteristics of biological sequences. The analytical results are generally represented by phylogenetic trees.
Yan Hong, Maozu Guo, Juan Wang
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