Results 41 to 50 of about 300,530 (260)
Analysis on Algorithms for Constructing Phylogenetic Trees From Distances
IEEE Access, 2019 Neighbour-joining algorithm (NJ for short) is an used widely algorithm for constructing phylogenetic trees from distances because of its high accuracy. For NJ costs a lot of time to construct phylogenetic trees for the large input data, it does not often
Juan Wang
doaj +1 more source
Generating normal networks via leaf insertion and nearest neighbor interchange
BMC Bioinformatics, 2019 Background Galled trees are studied as a recombination model in theoretical population genetics. This class of phylogenetic networks has been generalized to tree-child networks and other network classes by relaxing a structural condition imposed on ...
Louxin Zhang
doaj +1 more source
TreeSwift: A massively scalable Python tree package
SoftwareX, 2020 Phylogenetic trees are essential to evolutionary biology, and numerous methods exist that attempt to extract phylogenetic information applicable to a wide range of disciplines, such as epidemiology and metagenomics.
N. Moshiri
doaj +1 more source
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations [PDF]
, 2015 Phylogenetic networks are a generalization of evolutionary or phylogenetic trees that are used to represent the evolution of species which have undergone reticulate evolution.
Huber, Katharina T. +3 more
core +1 more source
Molecular bases of circadian magnesium rhythms across eukaryotes
FEBS Letters, EarlyView.Circadian rhythms in intracellular [Mg2+] exist across eukaryotic kingdoms. Central roles for Mg2+ in metabolism suggest that Mg2+ rhythms could regulate daily cellular energy and metabolism. In this Perspective paper, we propose that ancestral prokaryotic transport proteins could be responsible for mediating Mg2+ rhythms and posit a feedback model ...
Helen K. Feord, Gerben van Ooijen
wiley +1 more source
A strict upper bound for the partition distance and the cluster distance of phylogenetic trees for each fixed pair of topological trees. [PDF]
PLoS ONE, 2018 For each given pair of (rooted or unrooted) topological trees with the same number of leaves a strict upper bound is shown for the tree partition distance (also called symmetric difference metric and Robinson-Foulds distance)-in case of unrooted trees ...
Martin Middendorf, Nicolas Wieseke
doaj +1 more source
Kernelizations for the hybridization number problem on multiple nonbinary trees [PDF]
, 2016 Given a finite set $X$, a collection $\mathcal{T}$ of rooted phylogenetic trees on $X$ and an integer $k$, the Hybridization Number problem asks if there exists a phylogenetic network on $X$ that displays all trees from $\mathcal{T}$ and has reticulation
Kelk, Steven +2 more
core +4 more sources
Molecular Oncology, EarlyView.In this exploratory study, we investigated the relationship between the gut microbiota and outcome in patients with metastatic hormone receptor‐positive breast cancer, treated in a randomized clinical trial with chemotherapy alone or chemotherapy in combination with immune checkpoint blockade.
Andreas Ullern +7 more
wiley +1 more source
Cherry picking in forests: A new characterization for the unrooted hybrid number of two phylogenetic trees [PDF]
Discrete Mathematics & Theoretical Computer SciencePhylogenetic networks are a special type of graph which generalize phylogenetic trees and that are used to model non-treelike evolutionary processes such as recombination and hybridization. In this paper, we consider {\em unrooted} phylogenetic networks,
Katharina T. Huber +2 more
doaj +1 more source
FEBS Open Bio, EarlyView.Comparative analysis of chloroplast genomes from 14 genera of Thymelaeaceae revealed variation in gene content, ranging from 128 to 142 genes, primarily influenced by IR expansion/contraction events and pseudogenization of ndhF, ndhI, and ndhG. Two large inversions were detected within the large single‐copy region, including a synapomorphic inversion ...
Abdullah +8 more
wiley +1 more source