Results 11 to 20 of about 27,719 (254)
Current Biology, 2021 The reconstruction of evolutionary relationships among species is fundamental for our understanding of biodiversity. Today, evolutionary relationships are closely related with the depiction of the tree of life, and research on the topic is underpinned by methods in molecular phylogenetics that have grown in popularity since the 1960s.
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Phylogenomics with paralogs [PDF]
Proceedings of the National Academy of Sciences, 2015 Significance We demonstrate that the distribution of paralogs in large gene families contains in itself sufficient phylogenetic signal to infer fully resolved species phylogenies. This source of phylogenetic information is independent of information contained in orthologous sequences and is resilient against horizontal gene transfer.
Hellmuth, Marc +5 more
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Scientific Reports, 2023 The blotched nerite Nerita albicilla (Linnaeus 1758) is distributed in intertidal areas of the Indo-Pacific. In South Korea, it has been found only in the southernmost region of Jeju Island so far. Owing to its limited distribution, it can be a promising
Seonghyeon Hong +4 more
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Bioresources and Bioprocessing, 2021 Microbial flocculants are macromolecular substances produced by microorganisms. Due to its non-toxic, harmless, and biodegradable advantages, microbial flocculants have been widely used in various industrial fields, such as wastewater treatment ...
Cong Liu +4 more
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Evolutionary Sparse Learning for phylogenomics [PDF]
Molecular Biology and Evolution, 2021 AbstractWe introduce a supervised machine learning approach with sparsity constraints for phylogenomics, referred to as evolutionary sparse learning (ESL). ESL builds models with genomic loci—such as genes, proteins, genomic segments, and positions—as parameters.
Sudhir Kumar, Sudip Sharma
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Mitochondrial DNA. Part B. Resources, 2020 The complete mitochondrial genome of Protaetia brevitarsis, an important Scarabaeidae insect that is distributed across most Asian countries, was characterized using long template PCR methods.
Eun Hwa Choi +4 more
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Comparative Phylogenomics of Pathogenic and Nonpathogenic Species. [PDF]
, 2015 The Ascomycete Onygenales order embraces a diverse group of mammalian pathogens, including the yeast-forming dimorphic fungal pathogens Histoplasma capsulatum, Paracoccidioides spp. and Blastomyces dermatitidis, the dermatophytes Microsporum spp.
Taylor, John W, Whiston, Emily
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Mitochondrial DNA. Part B. Resources, 2021 A hen harrier Circus cyaneus (Accipitriformes: Accipitridae), a migrant raptor having a wide breeding range from Europe to Northeast Asia, migrates to more southerly areas (Southern Europe, China, Korea and Japan) in winter.
Eun Hwa Choi +7 more
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HMMER cut-off threshold tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold [PDF]
, 2018 Background: Protein superfamilies can be divided into subfamilies of proteins with different functional characteristics. Their sequences can be classified hierarchically, which is part of sequence function assignation.
Bondino, Hernán Gabriel +4 more
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Phylogenomic analysis restructures the ulvophyceae [PDF]
Journal of Phycology, 2021 Here, we present new transcriptome sequencing data from seven species of Dasycladales (Ulvophyceae) and a phylogenomic analysis of the Chlorophyta with a particular focus on Ulvophyceae. We have focused on a broad selection of green algal groups and carefully selected genes suitable for reconstructing deep eukaryote evolutionary histories.
Øyvind Sætren Gulbrandsen +4 more
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