Results 21 to 30 of about 11,388 (200)

Evidence of introgression amid phylogenetic conflict in Brachyotum, a plant radiation from the Tropical Andes

American Journal of Botany, EarlyView.
Abstract Premise The species‐rich flora of Tropical Andes underwent multiple rapid and recent diversifications, yet resolving their evolutionary histories remains challenging despite increasing phylogenomic data. Here, we examined phylogenomic conflict in Brachyotum (Melastomataceae) to identify sources preventing its resolution.
Diego Paredes‐Burneo, Ana M. Bedoya, Fabián A. Michelangeli, Lucas C. Majure, Carmen Ulloa Ulloa, Laura P. Lagomarsino   +5 more
wiley   +1 more source

Phylogenomics dataset and supermatrices

, 2019
Phylogenomics dataset of 56 ribosomal proteins conserved across Euryarchaeota and supermatrices derived from that datasetUntreated50% most heterogeneous sites removedSR4 recodedwithouth Haloarchaea and Hikarchaea ...
Joran Martijn (8038412)
core   +1 more source

Phylogenomic analyses data of the avian phylogenomics project [PDF]

, 2015
Background: Determining the evolutionary relationships among the major lineages of extant birds has been one of the biggest challenges in systematic biology.
Howard, Jason T.,, Edwards, Scott, Gilbert, M.T.P., Li, Cai,, Gilbert, M. Thomas Pius,, Ho, Simon Y. W., Ho, Simon Y.W., Burt, D., Andre J Aberer, Jun, Wang, da Fonseca, Rute R, Braun, Edward L., Jarvis, Erich D, da Fonseca, Rute, R, David P Mindell, Weber, Claudia C, Gilbert, M Thomas Pius, Alfaro Nuñez, Luis Alonso, Simon Y W Ho, Aberer, Andre J.,, Edwards, Scott V, Edwards, S.V., Li, B., Burt, Dave,, Li, Cai, da Fonseca, Rute R., Alonzo Alfaro-Núñez, Zhang, G., Hans Ellegren, Faircloth, B.C., Liu, L., Aberer, Andre J., Aberer, Andre J, Avian Phylogenomics Consortium, Braun, Edward, L, Aberer, Andre, J, Zhang, Guojie,, Li, C., Mindell, David P., Weber, C.C., Dave Burt, Benoit Nabholz, Jun, W., Ellegren, H., Stamatakis, A., Ellegren, Hans,, Edwards, Scott V., Narula, N., Mirarab, Siavash, Alexander Suh, Houde, P., Alexandros Stamatakis, Faircloth, Brant, C, Fonseca, Rute R. da, Peter Houde, Aberer, A.J., Mindell, David,, Gilbert, M. Thomas P., Li, Bo, Burt, Dave, Mirarab, Siavash,, Faircloth, Brant C., Weber, Claudia C., Erich D Jarvis, Jarvis, Erich, Jarvis, Erich D., Gilbert, M Thomas Pius, Thomas Pius, Edward L Braun, Howard, Jason, Narula, Nitish,, Rodrigues da Fonseca, Rute Andreia, Rute R da Fonseca, Cracraft, Joel,, Braun, E.L., Ho, Simon YW, Siavash Mirarab, da Fonseca, Rute,, Ho, Simon Y. W.,, Nabholz, Benoit, Braun, Edward,, Ellegren, Hans, Suh, Alexander, Gilbert, M Thomas Pius,, Warnow, Tandy, Weber, Claudia, C, da Fonseca, R.R., Jarvis, Erich D.,, Alfaro-Nunez, Alonzo,, Cracraft, Joel, Suh, Alexander,, Alfaro-Nunez, Alonzo, Liang Liu, Jarvis, E.D., Mindell, David, P, ?, ?, Claudia C Weber, Howard, J.T., Gilbert, M. Thomas Pius, Houde, Peter,, Stamatakis, Alexandros, Jason T Howard, Scott V Edwards, Faircloth, Brant,, Howard, Jason T, Suh, A., Mindell, D.P., Braun, Edward L, Zhang, Guojie, Weber, Claudia,, Nitish Narula, Joel Cracraft, Mirarab, S., Faircloth, Brant C.,, Mindell, David P, M Thomas Pius Gilbert, Wang Jun, Jun, Wang,, Braun, Edward L.,, Guojie Zhang, Nabholz, Benoit,, Alfaro-Núñez, A., Ho, S.Y.W., Brant C Faircloth, Stamatakis, Alexandros,, Bo Li, Weber, Claudia C.,, Liu, Liang, da Fonseca, Rute R.,, Cai Li, Tandy Warnow, Wang, Jun, Li, Bo,, Aberer, Andre,, Houde, Peter, Cracraft, J., Edwards, Scott V.,, Warnow, Tandy,, Howard, Jason T., Narula, Nitish, Liu, Liang,, Mindell, David P.,, Faircloth, Brant C, Ho, Simon Y W, Nabholz, B., Warnow, T.   +144 more
core   +1 more source

Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents - data and commands.

, 2021
Phylogenomic data ("anchored phylogenomics") and commands used for phylogenetic analyses. From: Nicolas et al.: Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: first fully resolved phylogeny, evolutionary history and ...
Bryja, J (via Mendeley Data)
core   +1 more source

Integrative utilization of genomic resources for improved phylogenetic resolution in Sonerileae (Melastomataceae)

American Journal of Botany, EarlyView.
Abstract Premise Advances in new next‐generation sequencing (NGS) methods have revolutionized phylogenetics, yet challenges remain in effectively utilizing data from a wide range of sources. A well‐resolved and broadly sampled phylogeny for Sonerileae, the second‐largest tribe in Melastomataceae, is still lacking, hindering our understanding of its ...
Luo Chen, Marie Claire Veranso‐Libalah, J. Peter Quakenbush, Ying Liu, Fabián A. Michelangeli, Diego F. Morales‐Briones, Gudrun Kadereit   +6 more
wiley   +1 more source

Detecting cryptic ghost lineage introgression in four‐taxon genomic datasets

Applications in Plant Sciences, EarlyView.
Abstract Premise Hybridization and introgression are pervasive evolutionary forces that have played fundamental roles in shaping the diversity of wild and domesticated plants. Four‐taxon tests for introgression provide a reliable framework for detecting signatures of ancient introgression from genomic data, which have played an important role in ...
Evan S. Forsythe, Blaine S. Pappa, Darren A. Clavette, Devin Y. Mendoza   +3 more
wiley   +1 more source

Ancient hybridization and phylogenetic discordance: Exploring evolutionary complexity in Asteraceae

Applications in Plant Sciences, EarlyView.
Abstract Premise Conflicting phylogenetic signals are common in plant phylogenomics and often reflect evolutionary histories shaped by processes like hybridization, incomplete lineage sorting, and whole‐genome duplication (WGD). We aimed to identify and assess these complex processes in the hyper‐diverse family Asteraceae to offer insight into the ...
Paige A. Ellestad, Erika R. Moore‐Pollard, Carolina M. Siniscalchi, Ramhari Thapa, Linda E. Watson, J. Mauricio Bonifacino, Jennifer R. Mandel   +6 more
wiley   +1 more source

HybSuite: An integrated pipeline for hybrid capture phylogenomics from reads to trees

Applications in Plant Sciences, EarlyView.
Abstract Premise Hybrid capture sequencing (Hyb‐Seq) is a widely used approach in phylogenomics, providing efficient access to targeted genomic regions. However, deriving high‐quality phylogenetic trees from raw sequencing reads requires extensive bioinformatics processing, which increases complexity, the risk of errors, and challenges in file ...
Yu‐Xuan Liu, Zi‐Jia Lu, Wyckliffe Omondi Omollo, Meng‐Meng Wang, Li‐Guo Zhang, Tao Xiong, Xue‐Qin Wang, Yi‐Ying Wang, Miao Sun   +8 more
wiley   +1 more source

Leveraging target enrichment and genome skimming (Hyb‐Seq) of herbarium collections to unlock timber DNA barcoding

Applications in Plant Sciences, EarlyView.
Abstract Premise DNA barcoding for timber species identification requires comprehensive reference datasets, informative DNA barcodes, and cost‐effective protocols. We developed a workflow leveraging Hyb‐Seq (target capture sequencing and genome skimming) to address these challenges, and we tested it on four genera from the mahogany family (Meliaceae ...
Sidonie Bellot, Dyana Ndiade Bourobou, Camila Quintero‐Berns, Laszlo Csiba, Peter Gasson, Barrett McBride, Bhely Angoboy Ilondea, Gaël U. D. Bouka, Emmanuel Ebanyenle, Cynel Gwenael Moundounga, Martin Ricker, Philomena Yarwoah, Guy Herman Zanguim Tchoutezou, Janvier Lisingo, Victor Deklerck   +14 more
wiley   +1 more source

Loss, persistence and reversal of phenotypic traits

Biological Reviews, EarlyView.
ABSTRACT The irreversibility of complex trait loss has long been a tenet of evolutionary biology. However, this idea is increasingly at odds with the numerous documented exceptions across the Tree of Life. We synthesise this growing body of evidence across a diverse array of taxa and traits, exploring the evolutionary conditions that enable ...
Giobbe Forni, Giuseppe Fusco, Filippo Nicolini, Heather Bruce, Andrea Luchetti   +4 more
wiley   +1 more source